Browse Element(s) Details


OsAffx.4840.1.S1_at

Description tigr:9634.m01484
TID=OsAffx.4840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1480010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14770Os.55250.1.S1_at1/116+8368640..8368990hypothetical protein
LOC_Os06g14780OsAffx.27641.1.S1_at11/116+8374476..8375775expressed protein
LOC_Os06g14790NANA6+8388606..8389343hypothetical protein
LOC_Os06g14800OsAffx.4840.1.S1_at10/116+8393887..8396837hypothetical protein
LOC_Os06g14810Os.47521.1.A1_at9/116+8407348..8409309very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os06g14820OsAffx.1072.1.S1_at1/116+8413998..8415786expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4840.1.S1_at--895--2971Chr06:8394418..8394442 (25 bp)
AATGTGCACCAATTCTGAGCTTCCT
LOC_Os06g14800
OsAffx.4840.1.S1_at--681--5891NONE
GAGCTTCCTTGTCACCAGATTAAAA
NONE
OsAffx.4840.1.S1_at--1129--7351Chr06:8395121..8395145 (25 bp)
GTGAAAGTCTCCAGATCTTCCAAAA
LOC_Os06g14800
OsAffx.4840.1.S1_at--791--2771Chr06:8395186..8395210 (25 bp)
AAGAGCCAGAATTGGACCCCATCAG
LOC_Os06g14800
OsAffx.4840.1.S1_at--1149--2471Chr06:8396101..8396125 (25 bp)
AACAGCTGGCTCAACGGCTCAGAGG
LOC_Os06g14800
OsAffx.4840.1.S1_at--967--8911Chr06:8396147..8396171 (25 bp)
TGAGCTCGTGGAACGCAGTCGATGC
LOC_Os06g14800
OsAffx.4840.1.S1_at--446--6331Chr06:8396167..8396191 (25 bp)
GATGCAGCTGTAGGGTCGTCTTCCT
LOC_Os06g14800
OsAffx.4840.1.S1_at--388--3491Chr06:8396222..8396242 (21 bp)
CATGGACGACGATGCGCAGGTTAAT
LOC_Os06g14800
OsAffx.4840.1.S1_at--500--4991Chr06:8396561..8396585 (25 bp)
GCAGGTTAATTACGTCACCGCCGGG
LOC_Os06g14800
OsAffx.4840.1.S1_at--400--991Chr06:8396589..8396613 (25 bp)
AGGATGAGGTCCTGTGCTCTGTCGT
LOC_Os06g14800
OsAffx.4840.1.S1_at--270--7151Chr06:8396612..8396636 (25 bp)
GTCTCTCCAGGTGAGGCTTCGAAGA
LOC_Os06g14800
Target Sequence 
AATGTGCACCAATTCTGAGCTTCCTTGTCACCAGATTAAAATCAGCAGTGAAAGTCTCCAGATCTTCCAAAAGAAAACTG
GCACGCTGGTAAAGGGGCTTGACGCTTTCAAAAAGAGCCAGAATTGGACCCCATCAGCCGGCGCTGACGAGGAACAACAG
CTGGCTCAACGGCTCAGAGGAGTTGAGTTGCCGGAGCATCATGAGCTCGTGGAACGCAGTCGATGCAGCTGTAGGGTCGT
CTTCCTGACCGAGCTCAGCCATTGTGCCATCCACGACATGGACGACGATGCGCAGGTTAATTACGTCACCGCCGGGGAGA
GGATGAGGTCCTGTGCTCTGTCGTCTCTCCAGGTGAGGCTTCGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis