Browse Element(s) Details


Os.47521.1.A1_at

Description gb:CR283743
DB_XREF= gi:44670309
DB_XREF=CR283743
CLONE=p648g08p3
TID=Os.47521.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.47521 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g148109/11very-long-chain fatty acid condensing enzyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14790NANA6+8388606..8389343hypothetical protein
LOC_Os06g14800OsAffx.4840.1.S1_at10/116+8393887..8396837hypothetical protein
LOC_Os06g14810Os.47521.1.A1_at9/116+8407348..8409309very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os06g14820OsAffx.1072.1.S1_at1/116+8413998..8415786expressed protein
LOC_Os06g14830OsAffx.13878.1.S1_at2/116+8430065..8431051hypothetical protein
LOC_Os06g14840OsAffx.29313.1.S1_at1/116+8433868..8435394transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0042335biological_processcuticle biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47521.1.A1_at--434--6151Chr06:8407724..8407748 (25 bp)
GAGGTGACAGTGTGCGTCTGCGTCT
LOC_Os06g14810
Os.47521.1.A1_at--252--2411Chr06:8407643..8407667 (25 bp)
AAAAAGGCAGCGAGCGACCGTGGCC
LOC_Os06g14810
Os.47521.1.A1_at--76--4131Chr06:8407577..8407601 (25 bp)
CGCGTACGAGCGGTTAAATCCCATC
LOC_Os06g14810
Os.47521.1.A1_at--742--6991Chr06:8407574..8407598 (25 bp)
GTACGAGCGGTTAAATCCCATCAAA
LOC_Os06g14810
Os.47521.1.A1_at--582--4031Chr06:8407571..8407595 (25 bp)
CGAGCGGTTAAATCCCATCAAATTT
LOC_Os06g14810
Os.47521.1.A1_at--172--9251Chr06:8407559..8407583 (25 bp)
TCCCATCAAATTTATACACGTACGT
LOC_Os06g14810
Os.47521.1.A1_at--608--6871Chr06:8407532..8407556 (25 bp)
GTATAGGCCGTGGTCCTCTCTCTCT
LOC_Os06g14810
Os.47521.1.A1_at--64--491Chr06:8407441..8407465 (25 bp)
ATCTGGGCTATTGATCTATCTCTCC
LOC_Os06g14810
Os.47521.1.A1_at--283--3891Chr06:8407439..8407463 (25 bp)
CTGGGCTATTGATCTATCTCTCCCC
LOC_Os06g14810
Os.47521.1.A1_at--43--7691Chr06:8407342..8407366 (25 bp)
GGGTTTGGTCAATTTGTCAATCAAT
NONE
Os.47521.1.A1_at--937--211Chr06:8407331..8407355 (25 bp)
ATTTGTCAATCAATACTATGTACCA
NONE
Target Sequence 
GAGGTGACAGTGTGCGTCTGCGTCTGCGCGCGCNCGGTGANACGTACGTACGTACTCCGCCCGACCGTGGCGCGTAACCN
GGAAAAAGGCAGCGAGCGACCGTGGCCNCGGCCGCGATAAATGCGGAGGCTGACGGGGTGCATGTGCGCGCGTACGAGCG
GTTAAATCCCATCAAATTTATACACGTACGTNCGTATAGGCCGTGGTCCTCTCTCTCTCTCTCGTTCAGTGTAATAACCN
TTTTGCNTGTTCTTCTTCTTCNTCNTCTCTCTCTTNCNCTTTTGAGATCTGGGCTATTGATCTATCTCTCCCCCCCACTT
ATCTCCNTCTCTTTCTCGCNCCATTGATAAGAAAAAATAGAAATGTACTACTGNGGGTTTGGTCAATTTGTCAATCAATA
CTATGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47521.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis