Browse Element(s) Details


OsAffx.27658.1.S1_at

Description tigr:9638.m03793
TID=OsAffx.27658.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4158011/11expressed protein
LOC_Os06g131108/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41580OsAffx.27658.1.S1_at11/1110+22042900..22045269expressed protein
LOC_Os10g41580OsAffx.27658.2.S1_at2/1110+22042900..22045269expressed protein
LOC_Os10g41590Os.12951.1.S1_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g41590Os.48056.1.S1_s_at11/1110+22059010..22066180Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27658.1.S1_at--174--10631Chr10:22043970..22043994 (25 bp)
TTCGTCGACCCGGACAGAGTGGAGG
LOC_Os10g41580
OsAffx.27658.1.S1_at--725--1511Chr10:22043150..22043174 (25 bp)
AGCAGCGAATCAATAGCGGAGGAGT
LOC_Os10g41580
OsAffx.27658.1.S1_at--199--10831Chr10:22043112..22043136 (25 bp)
TTGGGCCGTGGTGTCAGGCCTCCAT
LOC_Os10g41580
OsAffx.27658.1.S1_at--304--7314Chr06:7200269..7200293 (25 bp)
GTGCTGGAGCCTGACGACAAGGAAG
LOC_Os06g13110
OsAffx.27658.1.S1_at--234--3213Chr06:7200286..7200310 (25 bp)
CAAGGAAGCAGATGCCCAGGAACAA
LOC_Os06g13110
OsAffx.27658.1.S1_at--5--2733Chr06:7200291..7200315 (25 bp)
AAGCAGATGCCCAGGAACAAGGAGG
LOC_Os06g13110
OsAffx.27658.1.S1_at--760--6173Chr06:7200312..7200336 (25 bp)
GAGGAAAACCAGACTTCAAGACCAA
LOC_Os06g13110
OsAffx.27658.1.S1_at--818--1454Chr06:7200336..7200360 (25 bp)
AGAAGAAGCAAGTACCAGTCCAGCT
LOC_Os06g13110
OsAffx.27658.1.S1_at--382--2734Chr06:7200341..7200365 (25 bp)
AAGCAAGTACCAGTCCAGCTTGGGC
LOC_Os06g13110
OsAffx.27658.1.S1_at--1085--6954Chr06:7200347..7200371 (25 bp)
GTACCAGTCCAGCTTGGGCCAAGAG
LOC_Os06g13110
OsAffx.27658.1.S1_at--533--4354Chr06:7200350..7200374 (25 bp)
CCAGTCCAGCTTGGGCCAAGAGCAA
LOC_Os06g13110
Target Sequence 
TTCGTCGACCCGGACAGAGTGGAGGAGCAGCGAATCAATAGCGGAGGAGTGGAGGAGGCTTTGTTGGGCCGTGGTGTCAG
GCCTCCATCTCCACCAAGAGCAAGAGAAGATACAGAAGAGATGATACAAGAAGGAGCAGAAGAGGAAGAGGTGCTGGAGC
CTGACGACAAGGAAGCAGATGCCCAGGAACAAGGAGGAAAACCAGACTTCAAGACCAAGAAGAAGCAAGTACCAGTCCAG
CTTGGGCCAAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis