Browse Element(s) Details


OsAffx.27658.2.S1_at

Description tigr:9634.m01589
TID=OsAffx.27658.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1583011/11hypothetical protein
LOC_Os05g164607/11hypothetical protein
LOC_Os10g415802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g15779Os.50340.1.S1_at11/116+8959008..8963690expressed protein
LOC_Os06g15779Os.50340.2.S1_x_at10/116+8959008..8963690expressed protein
LOC_Os06g15800OsAffx.30774.2.S1_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15800OsAffx.30774.1.S1_s_at11/116+8968632..8970165hypothetical protein
LOC_Os06g15810Os.50766.1.S1_at11/116+8973515..8975734expressed protein
LOC_Os06g15820Os.50610.1.S1_at11/116+8976348..8980634NHL repeat-containing protein, putative, expressed
LOC_Os06g15830OsAffx.27658.2.S1_at11/116+8985169..8985819hypothetical protein
LOC_Os06g15840NANA6+8991764..8995096transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15850Os.47463.1.S1_x_at6/116+8998301..9003291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15850Os.14491.2.S1_x_at5/116+8998301..9003291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g15860NANA6+9005420..9006844hypothetical protein
LOC_Os06g15870NANA6+9008482..9013616retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27658.2.S1_at--929--713Chr06:8985481..8985505 (25 bp)
ATGTTCCAGGATCATGTGAGGATCG
LOC_Os06g15830
OsAffx.27658.2.S1_at--337--4353Chr06:8985486..8985510 (25 bp)
CCAGGATCATGTGAGGATCGTCGAC
LOC_Os06g15830
OsAffx.27658.2.S1_at--1138--5752Chr06:8985508..8985532 (25 bp)
GACGTCGTCGATCGTGTTGATTCGT
LOC_Os06g15830
OsAffx.27658.2.S1_at--565--9412Chr06:8985512..8985536 (25 bp)
TCGTCGATCGTGTTGATTCGTTGCT
LOC_Os06g15830
OsAffx.27658.2.S1_at--194--512Chr06:8985518..8985542 (25 bp)
ATCGTGTTGATTCGTTGCTTGCTGC
LOC_Os06g15830
OsAffx.27658.2.S1_at--389--8832Chr06:8985525..8985549 (25 bp)
TGATTCGTTGCTTGCTGCTGGTGGT
LOC_Os06g15830
OsAffx.27658.2.S1_at--828--3891Chr06:8985542..8985566 (25 bp)
CTGGTGGTGTTCGACTATGCGTTTT
LOC_Os06g15830
OsAffx.27658.2.S1_at--942--7411Chr06:8985548..8985572 (25 bp)
GTGTTCGACTATGCGTTTTCTATGG
LOC_Os06g15830
OsAffx.27658.2.S1_at--335--9371Chr06:8985552..8985576 (25 bp)
TCGACTATGCGTTTTCTATGGTGGT
LOC_Os06g15830
OsAffx.27658.2.S1_at--1070--591Chr06:8985558..8985582 (25 bp)
ATGCGTTTTCTATGGTGGTGGCGTC
LOC_Os06g15830
OsAffx.27658.2.S1_at--945--5412Chr06:8985759..8985783 (25 bp)
GAAGCCGCCGGCTGCCATTGCTCAA
LOC_Os06g15830
Target Sequence 
ATGTTCCAGGATCATGTGAGGATCGTCGACGTCGTCGATCGTGTTGATTCGTTGCTTGCTGCTGGTGGTGTTCGACTATG
CGTTTTCTATGGTGGTGGCGTCGCTTTTGCTTGCTTGTTGCAGACGGGGAGGCTGCGCCGGACTGCCGGAGGGAGAAGGA
GGCGGAGGCCTCGAATGCGGCGAGGCGCGGCGCCGAGCTGGAGGAGCGTGTCGCGCGGCTGCGGGCGGAGGCGGCAGCGT
GGCACCCTGCCGTCCCGCCGCGGCCAGGGAGGCGCGTGGAAGCCGCCGGCTGCCATTGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27658.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis