Browse Element(s) Details


OsAffx.27676.1.S1_at

Description tigr:9634.m01685
TID=OsAffx.27676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1674011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16710NANA6+9636930..9639533transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16720NANA6+9644565..9646796transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16730OsAffx.15463.1.S1_at9/116+9649355..9652143hypothetical protein
LOC_Os06g16740OsAffx.27676.1.S1_at11/116+9654226..9659017hypothetical protein
LOC_Os06g16740Os.53321.1.S1_at1/116+9654226..9659017hypothetical protein
LOC_Os06g16750OsAffx.22619.1.S1_x_at1/116+9671109..9672622hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27676.1.S1_at--1123--2971Chr06:9656827..9656851 (25 bp)
AATGTGGTCATTCTTGCTTCTAGGC
LOC_Os06g16740
OsAffx.27676.1.S1_at--411--5291Chr06:9656792..9656816 (25 bp)
GAAGGCCAGCCAACATTTTGAGCAG
LOC_Os06g16740
OsAffx.27676.1.S1_at--607--5851Chr06:9656224..9656248 (25 bp)
GACCACGGTCAGAGTATCGCATACG
LOC_Os06g16740
OsAffx.27676.1.S1_at--856--9811Chr06:9656190..9656214 (25 bp)
TAGAAACCCGGTCATCTTCAGTCAG
LOC_Os06g16740
OsAffx.27676.1.S1_at--41--3051Chr06:9655164..9655188 (25 bp)
AATCCGGATGCAAATTCTCTGTAGC
LOC_Os06g16740
OsAffx.27676.1.S1_at--330--8331Chr06:9654622..9654646 (25 bp)
GGCTGCATCTTCTTATGTACCCAAT
LOC_Os06g16740
OsAffx.27676.1.S1_at--270--6991Chr06:9654606..9654630 (25 bp)
GTACCCAATCGTGCTGGTTTGAACC
LOC_Os06g16740
OsAffx.27676.1.S1_at--919--5551Chr06:9654348..9654555 (25 bp)
GAAACCATGGTCGACAGCTTTTCCG
LOC_Os06g16740
OsAffx.27676.1.S1_at--1065--1551Chr06:9654333..9654357 (25 bp)
AGCTTTTCCGATTTTCCTCTGTTAT
LOC_Os06g16740
OsAffx.27676.1.S1_at--901--9471Chr06:9654316..9654340 (25 bp)
TCTGTTATTCCCCTCATCATGTGAG
LOC_Os06g16740
OsAffx.27676.1.S1_at--356--7971Chr06:9654258..9654282 (25 bp)
GGATCTAAACGACTGAGCGCACCAT
LOC_Os06g16740
Target Sequence 
AATGTGGTCATTCTTGCTTCTAGGCTTATCTCAATGAAGGCCAGCCAACATTTTGAGCAGCTTGAAGAGGAGATGTATTA
TCACATGGTCATGTTGGTTGGACCACGGTCAGAGTATCGCATACGGTGGATCATTAGAAACCCGGTCATCTTCAGTCAGA
GCAGTGAATCCGGATGCAAATTCTCTGTAGCGCACCCAACCATCTATGCTAACTGGTATGCAATTGCAACATATGGTCTC
ATAACCATCAGGCAATTCCTAGCACGAATGTGTAGTATAGAAGTAGGACTAGGAAGACACGGAGAATCAAACAGCACAAT
ATTTTTGGCTGCATCTTCTTATGTACCCAATCGTGCTGGTTTGAACCATTTATTACCTACATGCAAGCAGCAATGGTATG
GCAACCTACAGGCCAATGAAACCATGGTCGACAGCTTTTCCGATTTTCCTCTGTTATTCCCCTCATCATGTGAGGTCGTT
ACATGCATAACAAACACCGACTTCACCGGATCTAAACGACTGAGCGCACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis