Browse Element(s) Details


OsAffx.27683.1.S1_at

Description tigr:9634.m01740
TID=OsAffx.27683.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1726010/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17210NANA6+9970300..9971520transposon protein, putative, unclassified
LOC_Os06g17220NANA6+9974239..9975881UDP-glucoronosyl/UDP-glucosyl transferase family protein, putative
LOC_Os06g17230OsAffx.32056.1.S1_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.32056.1.S1_x_at11/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17230OsAffx.30536.1.S1_x_at1/116+9977198..9982699transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.1.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.3.S1_s_at11/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17240OsAffx.10637.4.S1_s_at8/116+9984252..9987938transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g17250NANA6+9990834..9992306glucosyltransferase, putative
LOC_Os06g17260OsAffx.27683.1.S1_at10/116+9995898..9997325UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g17270OsAffx.15471.1.S1_at11/116+9999558..9999839hypothetical protein
LOC_Os06g17280Os.53666.1.S1_s_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17280Os.53666.1.S1_x_at11/116+10002547..10005954PHD-finger family protein, expressed
LOC_Os06g17290Os.17915.1.S1_at11/116+10012886..10016979phosphatidylinositol 3- and 4-kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27683.1.S1_at--823--4071Chr06:9996639..9996663 (25 bp)
CGAGAGCTCGGCGTTAGTGTGCAAC
LOC_Os06g17260
OsAffx.27683.1.S1_at--120--1371Chr06:9996637..9996661 (25 bp)
AGAGCTCGGCGTTAGTGTGCAACAC
LOC_Os06g17260
OsAffx.27683.1.S1_at--511--1591Chr06:9996635..9996659 (25 bp)
AGCTCGGCGTTAGTGTGCAACACCA
LOC_Os06g17260
OsAffx.27683.1.S1_at--801--8371Chr06:9996630..9996654 (25 bp)
GGCGTTAGTGTGCAACACCAGCCGC
LOC_Os06g17260
OsAffx.27683.1.S1_at--172--6791Chr06:9996627..9996651 (25 bp)
GTTAGTGTGCAACACCAGCCGCGCG
LOC_Os06g17260
OsAffx.27683.1.S1_at--682--10071Chr06:9996625..9996649 (25 bp)
TAGTGTGCAACACCAGCCGCGCGCT
LOC_Os06g17260
OsAffx.27683.1.S1_at--1023--8131Chr06:9996556..9996580 (25 bp)
GGAAACGCGTCTGGGCTGTATGGCC
LOC_Os06g17260
OsAffx.27683.1.S1_at--715--1791NONE
ACCGCCGACGATGGGAGCTCTCCCG
NONE
OsAffx.27683.1.S1_at--1110--9551Chr06:9996130..9996154 (25 bp)
TCTTCAACGCGCGTCTCGTCGTGGA
LOC_Os06g17260
OsAffx.27683.1.S1_at--922--9711Chr06:9996127..9996151 (25 bp)
TCAACGCGCGTCTCGTCGTGGACGA
LOC_Os06g17260
OsAffx.27683.1.S1_at--841--1571Chr06:9995936..9995960 (25 bp)
AGCTCGCGGCGTGACCTCGACGGGA
LOC_Os06g17260
Target Sequence 
CGAGAGCTCGGCGTTAGTGTGCAACACCAGCCGCGCGCTCGAGGGGCGCTACCTCGACGCGCAGCCGCTCGAGGACCTGG
CGGGGAAACGCGTCTGGGCTGTATGGCCGGTGGCGCCGGAGTTCACCGCCGACGATGGGAGCTCTCCCGGAGGGGTTCGA
GGGCTCCCCGGCGGCGGGTTCGGCGTCGGGTTCGGCATCGGGGGTGGTGATCCGCGGCCCGCGGCGGCCGGGGTGCCCAT
GCTGGCGTGGCCGATGGCCGCCGACCAGTTCTTCAACGCGCGTCTCGTCGTGGACGAGGCCCGCGTGGGCGCGCCGGTGA
GCCTCGGCGGCTTCGGCCATGTCCCCGACGCGGGCGAGCTCGCCGGCGTCCTGCGTGAGGTCGTCGGCGAGGCGGGAGGC
GAGCTGAGGGCGCGCGCCAAGGAGCTCGCCGCGAGGATGGCGGAGGCGGCGCGAGGGGACGGCAGCTCGCGGCGTGACCT
CGACGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis