Browse Element(s) Details


OsAffx.27685.1.S1_at

Description tigr:9634.m01754
TID=OsAffx.27685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1740011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17380OsAffx.23206.1.S1_x_at5/116+10071239..10074357hypothetical protein
LOC_Os06g17380Os.53180.1.S1_at1/116+10071239..10074357hypothetical protein
LOC_Os06g17380Os.51919.1.S1_at1/116+10071239..10074357hypothetical protein
LOC_Os06g17390Os.52645.1.S1_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17390Os.52645.1.S2_at11/116+10081203..10086095Auxin-independent growth promoter, putative, expressed
LOC_Os06g17400OsAffx.27685.1.S1_at11/116+10095791..10096168hypothetical protein
LOC_Os06g17410OsAffx.15472.1.S1_at3/116+10100313..10101516Dof domain, zinc finger family protein, expressed
LOC_Os06g17419OsAffx.9243.1.S1_at1/116+10104233..10104550NA
LOC_Os06g17430OsAffx.27944.1.S1_x_at6/116+10107397..10107660hypothetical protein
LOC_Os06g17430OsAffx.27944.1.S1_at5/116+10107397..10107660hypothetical protein
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27685.1.S1_at--1002--9551Chr06:10096092..10096116 (25 bp)
TCTTCTCTGGGCTGGTCGTCTTCAG
LOC_Os06g17400
OsAffx.27685.1.S1_at--706--9511Chr06:10096089..10096113 (25 bp)
TCTCTGGGCTGGTCGTCTTCAGGGA
LOC_Os06g17400
OsAffx.27685.1.S1_at--336--6031Chr06:10096040..10096064 (25 bp)
GAGAGGCAGCCGACGAGCCTGGCCG
LOC_Os06g17400
OsAffx.27685.1.S1_at--1145--5731Chr06:10095965..10095989 (25 bp)
GACGGACGAGGAGCGGACCGCGAAG
LOC_Os06g17400
OsAffx.27685.1.S1_at--517--5811Chr06:10095950..10095974 (25 bp)
GACCGCGAAGGCATGCATGAGGAAC
LOC_Os06g17400
OsAffx.27685.1.S1_at--975--4131Chr06:10095947..10095971 (25 bp)
CGCGAAGGCATGCATGAGGAACCTC
LOC_Os06g17400
OsAffx.27685.1.S1_at--260--951Chr06:10095931..10095955 (25 bp)
AGGAACCTCGCATCGGTCGTCGCGG
LOC_Os06g17400
OsAffx.27685.1.S1_at--901--9412Chr06:10095915..10095939 (25 bp)
TCGTCGCGGCGCAGGACTTGAAGAC
LOC_Os06g17400
OsAffx.27685.1.S1_at--456--2711Chr06:10095895..10095919 (25 bp)
AAGACAATACTGAGGACGAAAGGGT
LOC_Os06g17400
OsAffx.27685.1.S1_at--390--8072Chr06:10095882..10095906 (25 bp)
GGACGAAAGGGTCCGCGGCCGCGAG
LOC_Os06g17400
OsAffx.27685.1.S1_at--882--5631Chr06:10095837..10095861 (25 bp)
GACAGGAGAAGAGCGCCATCATGCC
LOC_Os06g17400
Target Sequence 
TCTTCTCTGGGCTGGTCGTCTTCAGGGATGGTGGTGGCGACGGCATATGGGGGAGAGGCAGCCGACGAGCCTGGCCGAGC
TACGCCACCTCGAGAGGCTCCGCCGCCGCGACCGAGAAGACGGAGGAGACGGACGAGGAGCGGACCGCGAAGGCATGCAT
GAGGAACCTCGCATCGGTCGTCGCGGCGCAGGACTTGAAGACAATACTGAGGACGAAAGGGTCCGCGGCCGCGAGCAGCG
GAGAAGAGGCACGGAGACAGGAGAAGAGCGCCATCATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis