Browse Element(s) Details


OsAffx.27695.1.S1_at

Description tigr:9634.m01818
TID=OsAffx.27695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 137718 embryogenesis transmembrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1888011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18840NANA6+10703924..10706572retrotransposon protein, putative, LINE subclass
LOC_Os06g18850OsAffx.27693.1.S1_at11/116+10708310..10713424hypothetical protein
LOC_Os06g18860NANA6+10714502..10717209hAT family dimerisation domain containing protein
LOC_Os06g18870NANA6+10723595..10723849hypothetical protein
LOC_Os06g18880OsAffx.27695.1.S1_at11/116+10725715..10728489hypothetical protein
LOC_Os06g18890NANA6+10730135..10730489hypothetical protein
LOC_Os06g18900Os.40342.1.A1_s_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900OsAffx.15485.1.S1_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900Os.18183.1.S1_at1/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18910OsAffx.4869.1.S1_at11/116+10742132..10743460hypothetical protein
LOC_Os06g18920OsAffx.3235.1.S1_at1/116+10747593..10748711expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27695.1.S1_at--569--1411Chr06:10726240..10726264 (25 bp)
AGACAGTTCTTCTGGGCCGCAAGAA
LOC_Os06g18880
OsAffx.27695.1.S1_at--105--2331Chr06:10726177..10726201 (25 bp)
AAAGTATCTGATGCTGCTTGCAGTT
LOC_Os06g18880
OsAffx.27695.1.S1_at--189--4931Chr06:10726162..10726186 (25 bp)
GCTTGCAGTTTTAGCAGCTTCCATA
LOC_Os06g18880
OsAffx.27695.1.S1_at--987--671Chr06:10726094..10726118 (25 bp)
ATGACGGTGGCCACAAGGCTGGCAA
LOC_Os06g18880
OsAffx.27695.1.S1_at--261--8351Chr06:10726078..10726102 (25 bp)
GGCTGGCAATCCAATTCTTCATGAT
LOC_Os06g18880
OsAffx.27695.1.S1_at--1018--271Chr06:10726046..10726070 (25 bp)
ATAGGCGCTACAAAACATTCTTCTG
LOC_Os06g18880
OsAffx.27695.1.S1_at--851--6471Chr06:10725916..10725940 (25 bp)
GATACTTGATTTACTGGGTCTCATG
LOC_Os06g18880
OsAffx.27695.1.S1_at--1114--7691Chr06:10725901..10725925 (25 bp)
GGGTCTCATGACAGCTTTTGCTGCA
LOC_Os06g18880
OsAffx.27695.1.S1_at--707--3551Chr06:10725854..10725878 (25 bp)
CATCAGTCTATGTCTATGGGCTAGT
LOC_Os06g18880
OsAffx.27695.1.S1_at--125--10191Chr06:10725815..10725839 (25 bp)
TATACCTTTTGCTTGTGACCGTTTT
LOC_Os06g18880
OsAffx.27695.1.S1_at--13--2231Chr06:10725749..10725773 (25 bp)
AAATTCCTTCTCAGGACCATCCTGA
LOC_Os06g18880
Target Sequence 
AGACAGTTCTTCTGGGCCGCAAGAAAGTACAGATCCTCAAGAGAAAAAAGAGAGGAAAAGGAAAAAGTATCTGATGCTGC
TTGCAGTTTTAGCAGCTTCCATAGCATACCAAGCTGGTCTGAATCCACCTGGTGGCTTTTGGCCGGATGACGGTGGCCAC
AAGGCTGGCAATCCAATTCTTCATGATGTGAATCATAGGCGCTACAAAACATTCTTCTGCTTCAACGCATTCTCCTTCAT
GTCATCAATTGTTGTGATCATGCTTCTGCTGAGTAGAACTATCAGAGAGAAGGATGTACATATTGATGTATTGTACTTGA
TCATGATACTTGATTTACTGGGTCTCATGACAGCTTTTGCTGCAGGAAGCTGCAGAAGATTCAGGACATCAGTCTATGTC
TATGGGCTAGTAATCTGTGTTGTGGTATACCTTTTGCTTGTGACCGTTTTATCAAGTGGAATTGCAAAATATCTGAGATC
GAGGAAGGTTCAAATTCCTTCTCAGGACCATCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis