Browse Element(s) Details


OsAffx.27757.1.S1_at

Description tigr:9634.m02130
TID=OsAffx.27757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2175011/11hypothetical protein
LOC_Os03g395702/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g220501/11hypothetical protein
LOC_Os04g041001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21700NANA6+12540967..12545539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21710NANA6+12548755..12552502transposon protein, putative, unclassified, expressed
LOC_Os06g21720Os.26709.1.S1_at1/116+12554481..12554816S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase, putative
LOC_Os06g21730NANA6+12556855..12560057hypothetical protein
LOC_Os06g21740OsAffx.22699.1.S1_x_at1/116+12560467..12567386retrotransposon protein, putative, unclassified
LOC_Os06g21750OsAffx.27757.1.S1_at11/116+12569438..12570081hypothetical protein
LOC_Os06g21760NANA6+12571596..12573253SAM dependent carboxyl methyltransferase family protein
LOC_Os06g21770OsAffx.15541.1.S1_at1/116+12575858..12578369hypothetical protein
LOC_Os06g21780OsAffx.5954.1.S1_x_at3/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.3.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified
LOC_Os06g21780OsAffx.5954.5.S1_x_at2/116+12584395..12588840retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27757.1.S1_at--812--7436Chr06:12569701..12569725 (25 bp)
GTGTATGTCATGAAGTGTCACAAGC
LOC_Os06g21750
OsAffx.27757.1.S1_at--595--7113Chr06:12569707..12569731 (25 bp)
GTCATGAAGTGTCACAAGCAACTTA
LOC_Os06g21750
OsAffx.27757.1.S1_at--20--2731Chr06:12569722..12569746 (25 bp)
AAGCAACTTAAAAGCGGTGTCCTCT
LOC_Os06g21750
OsAffx.27757.1.S1_at--385--10491Chr06:12569729..12569753 (25 bp)
TTAAAAGCGGTGTCCTCTGCAGTTA
LOC_Os06g21750
OsAffx.27757.1.S1_at--892--3531Chr06:12569970..12569994 (25 bp)
CATCCACAACGAGTGCTGTCATATC
LOC_Os06g21750
OsAffx.27757.1.S1_at--513--3251Chr06:12569976..12570000 (25 bp)
CAACGAGTGCTGTCATATCCAAGGA
LOC_Os06g21750
OsAffx.27757.1.S1_at--300--1131Chr06:12569981..12570005 (25 bp)
AGTGCTGTCATATCCAAGGACGGTT
LOC_Os06g21750
OsAffx.27757.1.S1_at--926--3572Chr06:12598753..12598777 (25 bp)
CATATCCAAGGACGGTTCTTCGACC
NONE
OsAffx.27757.1.S1_at--140--1472Chr06:12598779..12598803 (25 bp)
AGAAGGCACCCTAGCGACAAGCGAT
NONE
OsAffx.27757.1.S1_at--539--8252Chr06:12598783..12598807 (25 bp)
GGCACCCTAGCGACAAGCGATGAAT
NONE
OsAffx.27757.1.S1_at--858--3712Chr06:12598789..12598813 (25 bp)
CTAGCGACAAGCGATGAATACAAGT
NONE
Target Sequence 
GTGTATGTCATGAAGTGTCACAAGCAACTTAAAAGCGGTGTCCTCTGCAGTTATTACACATGCGAATTCCTCAGGGTTAA
TGGGAGGTACATGACCAACGCAGAGGATTTGCCTAGAATTGAACATCGAACAAGCTTTGACGATGAAGGCATTAAAAATG
TGCAGCGGGACCTCTGCCACTTCATCCACAACGAGTGCTGTCATATCCAAGGACGGTTCTTCGACCCAGAAGGCACCCTA
GCGACAAGCGATGAATACAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis