Browse Element(s) Details

OsAffx.27771.2.S1_s_at

Description

tigr:9634.m02207
TID=OsAffx.27771.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09490	11/11	AT hook motif-containing protein, putative
LOC_Os06g22500	11/11	hypothetical protein
LOC_Os02g44350	11/11	AT hook motif-containing protein, putative
LOC_Os04g11850	4/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09470	OsAffx.32056.1.S1_x_at	11/11	6	+	4818447..4823823	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09470	OsAffx.32056.1.S1_at	11/11	6	+	4818447..4823823	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480	OsAffx.10637.3.S1_s_at	10/11	6	+	4825817..4829152	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480	OsAffx.10637.1.S1_s_at	9/11	6	+	4825817..4829152	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480	OsAffx.10637.4.S1_s_at	7/11	6	+	4825817..4829152	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09490	OsAffx.27771.1.S1_x_at	11/11	6	+	4832721..4834950	AT hook motif-containing protein, putative
LOC_Os06g09490	OsAffx.27771.2.S1_s_at	11/11	6	+	4832721..4834950	AT hook motif-containing protein, putative
LOC_Os06g09500	NA	NA	6	+	4835639..4836148	transposon protein, putative, unclassified
LOC_Os06g09510	OsAffx.27530.1.S1_at	11/11	6	+	4836766..4837236	hypothetical protein
LOC_Os06g09520	OsAffx.27531.1.S1_at	11/11	6	+	4838629..4839129	hypothetical protein
LOC_Os06g09530	OsAffx.15333.1.S1_at	11/11	6	+	4841375..4842370	hypothetical protein
LOC_Os06g09540	Os.34575.1.S1_at	10/11	6	+	4843552..4853691	SAC domain protein 3, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27771.2.S1_s_at--675--125	3	Chr06:4834397..4834421 (25 bp)	AGATTTACCATAGCTTTGATTCTGT	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--733--815	4	Chr06:4834567..4834591 (25 bp)	GGAACAAGATTAATGATCAGGGCAT	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--333--655	5	Chr06:4834574..4834598 (25 bp)	GATTAATGATCAGGGCATTCCAAGA	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--25--71	6	Chr09:311050..311074 (25 bp)	ATGATCAGGGCATTCCAAGACAATG	NONE
OsAffx.27771.2.S1_s_at--934--107	7	Chr09:311056..311080 (25 bp)	AGGGCATTCCAAGACAATGCAATTG	NONE
OsAffx.27771.2.S1_s_at--726--951	6	Chr06:4834731..4834755 (25 bp)	TCTAAGTTTCGCAATGACAATTAAT	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--1117--559	3	Chr06:4834746..4834770 (25 bp)	GACAATTAATAAATCACAGGGACAA	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--951--431	4	Chr06:4834881..4834905 (25 bp)	GCCTAAAAAAGAAGTGCACCCCACA	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--661--243	3	Chr06:4834887..4834911 (25 bp)	AAAAGAAGTGCACCCCACAGGAAGG	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--172--533	3	Chr06:4834891..4834915 (25 bp)	GAAGTGCACCCCACAGGAAGGAGCA	LOC_Os06g09490
OsAffx.27771.2.S1_s_at--897--111	4	Chr06:4834893..4834917 (25 bp)	AGTGCACCCCACAGGAAGGAGCACA	LOC_Os06g09490

Target Sequence

AGATTTACCATAGCTTTGATTCTGTCGATGATGATTCCCAAAATAACTACCCTTTGGACTTTCTTAACACGATAACTCCA
AATGGCCTCTCTCCACATGAGCTAAAAGTTAAGGTCAACTGCCATGCTATTCTCCTCCGCAACCTTGATCCTAACAATGG
ATTATGCAATGGAACAAGATTAATGATCAGGGCATTCCAAGACAATGCAATTGATACTGAAATCGTTGGTGGACATCATG
CACTAAAAAGGGTGTTCATGCCAAGGATCCCTCTGTCTCCTTCAAATGATATTTCACTTTCTTTCAAGTTTAAGAGAAAG
CAATTTCCAATACGTCTAAGTTTCGCAATGACAATTAATAAATCACAGGGACAAACCATCCCGAATATCGGTATCTATCT
TCCAGAGCCTGTATTCTCGCATGGGCAACTTTATGTTGCATTATCAAGAGGGGTGTCAAGAAAAACGACAAAGATTTTGG
CAAAGCCTAAAAAAGAAGTGCACCCCACAGGAAGGAGCACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis