Browse Element(s) Details


OsAffx.27803.1.S1_at

Description tigr:9634.m02404
TID=OsAffx.27803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2430011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g24240OsAffx.27802.1.S1_at11/116+14195595..14195963hypothetical protein
LOC_Os06g24250Os.55780.1.S1_at5/116+14196704..14197850hypothetical protein
LOC_Os06g24260NANA6+14200365..14200856hypothetical protein
LOC_Os06g24270NANA6+14202787..14205497retrotransposon protein, putative, unclassified
LOC_Os06g24280NANA6+14207863..14208417hypothetical protein
LOC_Os06g24290OsAffx.15594.1.S1_at11/116+14209394..14209921Pathogenesis-related protein PRB1-3 precursor, putative
LOC_Os06g24300OsAffx.27803.1.S1_at11/116+14211158..14212559hypothetical protein
LOC_Os06g24310NANA6+14216111..14220221retrotransposon protein, putative, unclassified
LOC_Os06g24320OsAffx.22896.1.S1_x_at2/116+14222405..14224508transposon protein, putative, unclassified
LOC_Os06g24330OsAffx.15595.1.S1_at11/116+14228142..14231602retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27803.1.S1_at--1057--7691Chr06:14212483..14212507 (25 bp)
GGGTGCATGACCAGTTAGAGCTATG
LOC_Os06g24300
OsAffx.27803.1.S1_at--782--4991Chr06:14212479..14212503 (25 bp)
GCATGACCAGTTAGAGCTATGGTTT
LOC_Os06g24300
OsAffx.27803.1.S1_at--17--3451Chr06:14212472..14212496 (25 bp)
CAGTTAGAGCTATGGTTTGATTCAA
LOC_Os06g24300
OsAffx.27803.1.S1_at--14--10451Chr06:14212469..14212493 (25 bp)
TTAGAGCTATGGTTTGATTCAAATG
LOC_Os06g24300
OsAffx.27803.1.S1_at--95--2432Chr06:11695762..11696244 (25 bp)
AAAACATGCAGAAATGTGTGAGGAT
NONE
OsAffx.27803.1.S1_at--114--1211Chr06:14211391..14211415 (25 bp)
AGTATTGATGTGTGTTCTTCCTGCC
LOC_Os06g24300
OsAffx.27803.1.S1_at--676--6871Chr06:14211390..14211414 (25 bp)
GTATTGATGTGTGTTCTTCCTGCCC
LOC_Os06g24300
OsAffx.27803.1.S1_at--418--10671Chr06:14211374..14211398 (25 bp)
TTCCTGCCCTACACGGGCGGTGAGG
LOC_Os06g24300
OsAffx.27803.1.S1_at--904--7311Chr06:14211226..14211379 (25 bp)
GTGAGGGTGGTTTATGAACCCGATT
LOC_Os06g24300
OsAffx.27803.1.S1_at--636--7731Chr06:14211221..14211242 (22 bp)
GGTGGTTTATGAACCCGATTATGTT
LOC_Os06g24300
OsAffx.27803.1.S1_at--1032--10091Chr06:14211214..14211238 (25 bp)
TATGAACCCGATTATGTTGGTGGTG
LOC_Os06g24300
Target Sequence 
GGGTGCATGACCAGTTAGAGCTATGGTTTGATTCAAATGAAAAACATGCAGAAATGTGTGAGGATGAAAGTATTGATGTG
TGTTCTTCCTGCCCTACACGGGCGGTGAGGGTGGTTTATGAACCCGATTATGTTGGTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis