Browse Element(s) Details


OsAffx.27839.1.S1_at

Description tigr:9634.m02650
TID=OsAffx.27839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2782010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27780NANA6+15730436..15731075transposon protein, putative, unclassified
LOC_Os06g27790Os.24588.1.S1_at11/116+15732747..15736720Selenium-binding protein, putative, expressed
LOC_Os06g27800Os.48168.1.S1_at11/116+15737396..15743796Uncharacterised protein family containing protein, expressed
LOC_Os06g27800Os.48168.1.S2_at10/116+15737396..15743796Uncharacterised protein family containing protein, expressed
LOC_Os06g27810NANA6+15751869..15753320retrotransposon protein, putative, unclassified
LOC_Os06g27820OsAffx.27839.1.S1_at10/116+15753958..15758168hypothetical protein
LOC_Os06g27830Os.4939.1.S1_at11/116+15760135..15764626WRKY transcription factor 19, putative, expressed
LOC_Os06g27840NANA6+15768343..15775360retrotransposon protein, putative, LINE subclass
LOC_Os06g27850Os.53496.1.S1_at11/116+15775961..15777611Peroxidase family protein, expressed
LOC_Os06g27860OsAffx.4947.1.S1_at11/116+15780494..15784810poor homologous synapsis 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27839.1.S1_at--600--4631Chr06:15755101..15755125 (25 bp)
GCGATCATCTGCCTGCGAAAATGCA
LOC_Os06g27820
OsAffx.27839.1.S1_at--947--2991Chr06:15755016..15755040 (25 bp)
AATGAGTTGGACCTCCAGCATTGCT
LOC_Os06g27820
OsAffx.27839.1.S1_at--599--7511Chr06:15754991..15755015 (25 bp)
GTGGAACAAACAGGTCGCCTCTTTG
LOC_Os06g27820
OsAffx.27839.1.S1_at--670--4451Chr06:15754975..15754999 (25 bp)
GCCTCTTTGGTTCTCAGACAACATT
LOC_Os06g27820
OsAffx.27839.1.S1_at--794--2511Chr06:15754956..15754980 (25 bp)
AACATTGATACCATCATGCTGCCGC
LOC_Os06g27820
OsAffx.27839.1.S1_at--700--7791Chr06:15754894..15754918 (25 bp)
GGTCCCTGGGTGTGTCAGCTATCTG
LOC_Os06g27820
OsAffx.27839.1.S1_at--573--10151Chr06:15754875..15754899 (25 bp)
TATCTGCTGGCACACGGACATCGTG
LOC_Os06g27820
OsAffx.27839.1.S1_at--337--8131Chr06:15754860..15754884 (25 bp)
GGACATCGTGGTGGCAACCCGGATC
LOC_Os06g27820
OsAffx.27839.1.S1_at--1120--7511Chr06:15754777..15754801 (25 bp)
GTGGAGCGCAATGCCAACTGGATCT
LOC_Os06g27820
OsAffx.27839.1.S1_at--764--1511Chr06:15754709..15754733 (25 bp)
AGCAGGAGTGCTATCCGGCTAGCCG
LOC_Os06g27820
OsAffx.27839.1.S1_at--999--5651NONE
GACAGTGATGTCGTTTTAGCTCAAT
NONE
Target Sequence 
GCGATCATCTGCCTGCGAAAATGCACAGTTTGGTGTTGATGGAGGAAGCTGCTGTGACCCTCGCCAACCTGGAGATCAAA
GGACAAATGAGTTGGACCTCCAGCATTGCTGTGGAACAAACAGGTCGCCTCTTTGGTTCTCAGACAACATTGATACCATC
ATGCTGCCGCCGTTCTGCAATGGTCATGGCAGAGCCAAGCGCGGTCGGGTCCCTGGGTGTGTCAGCTATCTGCTGGCACA
CGGACATCGTGGTGGCAACCCGGATCGCTGCAGGGATGAAGCCGTGGAGCGCAATGCCAACTGGATCTCCCTCGGAAGGC
GCGAGCACACACCGTTTGCCGGTTTCTGATGAGCAGGAGTGCTATCCGGCTAGCCGCCGGCGGAGGGTTCTGGCCTCTCC
CATCCGCCCGTGCATTCTTCTCCGCGCGGGGGAGCTGCCTGACGACAGTGATGTCGTTTTAGCTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis