Browse Element(s) Details


OsAffx.27948.1.S1_at

Description tigr:9634.m03333
TID=OsAffx.27948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3524011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35210Os.9209.2.S1_at10/116+20533183..20540697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35220NANA6+20545708..20551299retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35230NANA6+20552375..20552868hypothetical protein
LOC_Os06g35240OsAffx.27948.1.S1_at11/116+20554175..20554507hypothetical protein
LOC_Os06g35250OsAffx.22699.1.S1_x_at2/116+20554648..20557647retrotransposon protein, putative, unclassified
LOC_Os06g35260NANA6+20558050..20559937retrotransposon protein, putative, unclassified
LOC_Os06g35270NANA6+20560507..20563444hypothetical protein
LOC_Os06g35280NANA6+20573706..20575023retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35290OsAffx.15756.1.S1_at11/116+20577773..20578270hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27948.1.S1_at--136--6694Chr07:7886824..7886956 (25 bp)
GTTGCCGTATTGGTTCAAACTGATT
NONE
OsAffx.27948.1.S1_at--1130--2552Chr06:12566078..12566102 (25 bp)
AACTGAGGTTGAGTTAGCCCTCCTT
NONE
OsAffx.27948.1.S1_at--327--4295Chr04:8992622..8993102 (25 bp)
CCTCCTTGCTGATACTGAACTTGTG
NONE
OsAffx.27948.1.S1_at--921--6451Chr06:20554354..20554378 (25 bp)
GATAATTTATATTGCCTCCTTGGTA
LOC_Os06g35240
OsAffx.27948.1.S1_at--1141--72Chr03:24078871..24078895 (25 bp)
ATTGCCTCCTTGGTAATTCTGGTAA
NONE
OsAffx.27948.1.S1_at--736--3091Chr06:20554311..20554335 (25 bp)
AATACTTTGTACCAAGTGCTCCGGC
LOC_Os06g35240
OsAffx.27948.1.S1_at--1023--8232Chr07:6203913..6203937 (25 bp)
GGCACAATCTGAGGCATCGTCGTAC
NONE
OsAffx.27948.1.S1_at--480--513Chr07:7886646..7886670 (25 bp)
ATCGTCGTACCATCTGGCTGTATAT
NONE
OsAffx.27948.1.S1_at--628--3531Chr06:20554264..20554288 (25 bp)
CATCTGGCTGTATATGGTGAACTAA
LOC_Os06g35240
OsAffx.27948.1.S1_at--404--8831Chr06:20554223..20554247 (25 bp)
TGATTCAGGGCATGTCCAGCCTATT
LOC_Os06g35240
OsAffx.27948.1.S1_at--213--1592Chr07:7886578..7886597 (20 bp)
AGCCTATTGCCCAGCCGATTGATTC
NONE
Target Sequence 
GTTGCCGTATTGGTTCAAACTGATTATATTGAGAAGCAAACTGAGGTTGAGTTAGCCCTCCTTGCTGATACTGAACTTGT
GGGGAAGGAGGCTGATATTGATAATTTATATTGCCTCCTTGGTAATTCTGGTAATTTGGCTGAATACTTTGTACCAAGTG
CTCCGGCACAATCTGAGGCATCGTCGTACCATCTGGCTGTATATGGTGAACTAAATGTTCTGGAACAACCTGATTCAGGG
CATGTCCAGCCTATTGCCCAGCCGATTGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis