Browse Element(s) Details


OsAffx.27960.1.S1_at

Description tigr:9634.m03449
TID=OsAffx.27960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3634011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36330OsAffx.15774.1.S1_at8/116+21314875..21316581MATE efflux family protein, expressed
LOC_Os06g36340OsAffx.27961.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36340OsAffx.27960.1.S1_at11/116+21325481..21329847hypothetical protein
LOC_Os06g36349NANA6+21340454..21341106NA
LOC_Os06g36360Os.14584.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360OsAffx.15775.1.S1_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.14584.1.S1_s_at11/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36360Os.16439.1.S1_at2/116+21342404..21349084Poly polymerase central domain containing protein, expressed
LOC_Os06g36370NANA6+21351883..21352242hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27960.1.S1_at--291--7731Chr06:21326307..21326331 (25 bp)
GGTGGGAACGTCTGAACGTGCTCAC
LOC_Os06g36340
OsAffx.27960.1.S1_at--1157--7611Chr06:21326310..21326334 (25 bp)
GGGAACGTCTGAACGTGCTCACCGC
LOC_Os06g36340
OsAffx.27960.1.S1_at--730--4213Chr12:5423752..5423776 (25 bp)
CCGCCGGCCGCGAAATGGTGCTCGA
NONE
OsAffx.27960.1.S1_at--1156--2291Chr06:21326343..21326367 (25 bp)
AAATGGTGCTCGACGGCACGCGCAT
LOC_Os06g36340
OsAffx.27960.1.S1_at--610--8252Chr06:21326357..21326381 (25 bp)
GGCACGCGCATCACGAAGCTCTGTG
LOC_Os06g36340
OsAffx.27960.1.S1_at--662--1833Chr06:21326360..21326384 (25 bp)
ACGCGCATCACGAAGCTCTGTGTGT
LOC_Os06g36340
OsAffx.27960.1.S1_at--968--4112Chr06:21326363..21326387 (25 bp)
CGCATCACGAAGCTCTGTGTGTCGT
LOC_Os06g36340
OsAffx.27960.1.S1_at--18--393Chr06:21326366..21326390 (25 bp)
ATCACGAAGCTCTGTGTGTCGTCCT
LOC_Os06g36340
OsAffx.27960.1.S1_at--435--1851Chr06:21326369..21326393 (25 bp)
ACGAAGCTCTGTGTGTCGTCCTATG
LOC_Os06g36340
OsAffx.27960.1.S1_at--241--5411Chr06:21326371..21326395 (25 bp)
GAAGCTCTGTGTGTCGTCCTATGCC
LOC_Os06g36340
OsAffx.27960.1.S1_at--207--1591Chr06:21326373..21326397 (25 bp)
AGCTCTGTGTGTCGTCCTATGCCGA
LOC_Os06g36340
Target Sequence 
GGTGGGAACGTCTGAACGTGCTCACCGCCGGCCGCGAAATGGTGCTCGACGGCACGCGCATCACGAAGCTCTGTGTGTCG
TCCTATGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis