Browse Element(s) Details


OsAffx.2797.1.S1_at

Description tigr:9630.m02845
TID=OsAffx.2797.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2977011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29740OsAffx.12279.1.S1_x_at11/112+17682433..17686377expressed protein
LOC_Os02g29740OsAffx.12279.1.S1_at11/112+17682433..17686377expressed protein
LOC_Os02g29750OsAffx.30473.2.S1_x_at1/112+17687942..17691811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29750OsAffx.7533.1.S1_x_at1/112+17687942..17691811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29750OsAffx.7533.1.S1_at1/112+17687942..17691811retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29760OsAffx.10371.1.S1_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29760OsAffx.22699.1.S1_x_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29760OsAffx.16111.1.S1_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29760OsAffx.20615.1.S1_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29770OsAffx.2797.1.S1_at11/112+17707787..17710889hypothetical protein
LOC_Os02g29770OsAffx.31829.2.S1_x_at1/112+17707787..17710889hypothetical protein
LOC_Os02g29780NANA2+17714553..17719688retrotransposon protein, putative, unclassified
LOC_Os02g29790NANA2+17720528..17721480hypothetical protein
LOC_Os02g29800NANA2+17726255..17726572hypothetical protein
LOC_Os02g29810OsAffx.12281.1.S1_at11/112+17729224..17730320hypothetical protein
LOC_Os02g29820NANA2+17734541..17735537retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2797.1.S1_at--124--1871Chr02:17708338..17708362 (25 bp)
ACGAGCAAAGCTTTGGCACCCTTAG
LOC_Os02g29770
OsAffx.2797.1.S1_at--715--5091Chr02:17708323..17708347 (25 bp)
GCACCCTTAGCCGATGACGTCAAGT
LOC_Os02g29770
OsAffx.2797.1.S1_at--1021--3691Chr02:17708251..17708275 (25 bp)
CTAGTGGCCAGTTGTGGGTCTGTCA
LOC_Os02g29770
OsAffx.2797.1.S1_at--1117--5651Chr02:17708224..17708248 (25 bp)
GACAGGTTTCTTAAGATCCATGACA
LOC_Os02g29770
OsAffx.2797.1.S1_at--757--9571Chr02:17708087..17708111 (25 bp)
TCTTGAGGCCACAATTCGAGCCAGT
LOC_Os02g29770
OsAffx.2797.1.S1_at--771--5851Chr02:17708070..17708094 (25 bp)
GAGCCAGTAGAACTTCGATCAATGA
LOC_Os02g29770
OsAffx.2797.1.S1_at--540--7791Chr02:17708014..17708038 (25 bp)
GGTCCAAGTTCTATTCAGGCCAATA
LOC_Os02g29770
OsAffx.2797.1.S1_at--496--3111Chr02:17707993..17708017 (25 bp)
AATATTGATCGGCTACAGGCCAGAA
LOC_Os02g29770
OsAffx.2797.1.S1_at--934--1431Chr02:17707964..17707988 (25 bp)
AGAACTCTTGGCTGAACTAGAACAA
LOC_Os02g29770
OsAffx.2797.1.S1_at--624--5511Chr02:17707945..17707969 (25 bp)
GAACAATGTAATGCCCAGATTGCAA
LOC_Os02g29770
OsAffx.2797.1.S1_at--391--571Chr02:17707856..17707880 (25 bp)
ATCCATCAAGCATTTAGCCAATCTG
LOC_Os02g29770
Target Sequence 
ACGAGCAAAGCTTTGGCACCCTTAGCCGATGACGTCAAGTCCATCCTGCTGGACATCTCGACCATGCTTGAAGGTTCTCT
AGAAACCCTAGTGGCCAGTTGTGGGTCTGTCAGAGACAGGTTTCTTAAGATCCATGACAGAATTCCAGATGAGCTAGCCG
ATGCCATAACTCCAGCAGCATATCTTGAACAACATCGGCTCAAGCTTGAGAAGGCTAAACAAAGGATTGCTGATCGTCGT
GAGAGAAAGGATCTTGAGGCCACAATTCGAGCCAGTAGAACTTCGATCAATGAAGAGAAAGCTAAACTTAATGGACTAGA
AGCTGGTCCAAGTTCTATTCAGGCCAATATTGATCGGCTACAGGCCAGAAAAATAGAACTCTTGGCTGAACTAGAACAAT
GTAATGCCCAGATTGCAATTGAGGAACAAAAAATTGTCGATATGCCAAAAGCTACAGAAGATCAAAGATCCAAGTTGAAG
GCATCCATCAAGCATTTAGCCAATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2797.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis