Browse Element(s) Details


OsAffx.12281.1.S1_at

Description tigr:9630.m02849
TID=OsAffx.12281.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2981011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29760OsAffx.10371.1.S1_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29760OsAffx.22699.1.S1_x_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29760OsAffx.16111.1.S1_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29760OsAffx.20615.1.S1_at1/112+17698323..17707429retrotransposon protein, putative, unclassified, expressed
LOC_Os02g29770OsAffx.2797.1.S1_at11/112+17707787..17710889hypothetical protein
LOC_Os02g29770OsAffx.31829.2.S1_x_at1/112+17707787..17710889hypothetical protein
LOC_Os02g29780NANA2+17714553..17719688retrotransposon protein, putative, unclassified
LOC_Os02g29790NANA2+17720528..17721480hypothetical protein
LOC_Os02g29800NANA2+17726255..17726572hypothetical protein
LOC_Os02g29810OsAffx.12281.1.S1_at11/112+17729224..17730320hypothetical protein
LOC_Os02g29820NANA2+17734541..17735537retrotransposon protein, putative, unclassified
LOC_Os02g29830NANA2+17736150..17737987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g29840OsAffx.24501.1.S1_at11/112+17738259..17739089hypothetical protein
LOC_Os02g29850OsAffx.27854.1.S1_at9/112+17739944..17744101hypothetical protein
LOC_Os02g29850OsAffx.14826.1.S1_at1/112+17739944..17744101hypothetical protein
LOC_Os02g29860OsAffx.12282.1.S1_at11/112+17748945..17750571hypothetical protein
LOC_Os02g29870Os.54691.1.S1_x_at4/112+17754217..17762511Zinc knuckle family protein
LOC_Os02g29870OsAffx.26095.1.S1_at1/112+17754217..17762511Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12281.1.S1_at--383--4791Chr02:17729722..17729746 (25 bp)
GCTCCTGTTGTTTTCTTCGTACTTA
LOC_Os02g29810
OsAffx.12281.1.S1_at--623--10471Chr02:17729744..17729768 (25 bp)
TTACTGCGACATTCTTTTTCCTATC
LOC_Os02g29810
OsAffx.12281.1.S1_at--1105--4871Chr02:17729856..17729880 (25 bp)
GCTTGGGAGAAACCTGAACCTGGCT
LOC_Os02g29810
OsAffx.12281.1.S1_at--358--1771Chr02:17729873..17729897 (25 bp)
ACCTGGCTGGGCAAAGATCAATGTT
LOC_Os02g29810
OsAffx.12281.1.S1_at--717--10551Chr02:17729947..17729971 (25 bp)
TTCGGGATAGCGCAGGTTTACCTCT
LOC_Os02g29810
OsAffx.12281.1.S1_at--783--10451Chr02:17729964..17729988 (25 bp)
TTACCTCTGTTATCGTCCTGGAGAA
LOC_Os02g29810
OsAffx.12281.1.S1_at--815--7371Chr02:17729991..17730015 (25 bp)
GTGACCCGAGTATGCTCAGCTGAAG
LOC_Os02g29810
OsAffx.12281.1.S1_at--420--1471Chr02:17730069..17730093 (25 bp)
AGAATGCCAGATATCCTCGAATCGG
LOC_Os02g29810
OsAffx.12281.1.S1_at--338--2111Chr02:17730112..17730136 (25 bp)
ACATGCTTTCTGTTAAGTCTTCTGA
LOC_Os02g29810
OsAffx.12281.1.S1_at--1125--7511Chr02:17730146..17730170 (25 bp)
GTGGCATTCTTTGATCACGGAAGTT
LOC_Os02g29810
OsAffx.12281.1.S1_at--783--7991Chr02:17730175..17730199 (25 bp)
GGATGATGTGTCTTCTCCAAGATGT
LOC_Os02g29810
Target Sequence 
GCTCCTGTTGTTTTCTTCGTACTTACTGCGACATTCTTTTTCCTATCCAGCAAAATGATATAGTCAACAAGGGTAAAGGA
ATTATAGGAGTTAACAATCTAAATGTTCTTGGTAAGGATAAGTCAGTTAGGGTTGCTTGGGAGAAACCTGAACCTGGCTG
GGCAAAGATCAATGTTGATGGGGCCTTTATAGCTGAGTCAGGACAAGCTAGGATAGGTGTTATAATTCGGGATAGCGCAG
GTTTACCTCTGTTATCGTCCTGGAGAACAGTGACCCGAGTATGCTCAGCTGAAGAGGTTGAATTGCTAGCCTGTAATGAA
GGCTTGAAGCTTGCTTTAGAATGGATTAGAATGCCAGATATCCTCGAATCGGATTGTGTTACTGCTATTAACATGCTTTC
TGTTAAGTCTTCTGATAAATCTAGGTGGCATTCTTTGATCACGGAAGTTAAGGGGATGATGTGTCTTCTCCAAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12281.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis