Browse Element(s) Details


OsAffx.27992.1.S1_at

Description tigr:9634.m03684
TID=OsAffx.27992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3864011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38609NANA6+22914542..22919920retrotransposon protein, putative, unclassified
LOC_Os06g38612NANA6+22921676..22924773retrotransposon protein, putative, unclassified
LOC_Os06g38620NANA6+22925246..22928586retrotransposon protein, putative, unclassified
LOC_Os06g38629NANA6+22935861..22936325NA
LOC_Os06g38640OsAffx.27992.1.S1_at11/116+22937993..22939810Leucine Rich Repeat family protein
LOC_Os06g38650OsAffx.5048.1.S1_at11/116+22950399..22953848Leucine Rich Repeat family protein, expressed
LOC_Os06g38660OsAffx.5049.1.S1_s_at11/116+22955672..22956310expressed protein
LOC_Os06g38660Os.7966.1.S1_at11/116+22955672..22956310expressed protein
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27992.1.S1_at--1078--9091Chr06:22939310..22939334 (25 bp)
TGCTCCAAATTGACTCAACTGCTTC
LOC_Os06g38640
OsAffx.27992.1.S1_at--663--9711Chr06:22939324..22939348 (25 bp)
TCAACTGCTTCTGGATGGGAATAAT
LOC_Os06g38640
OsAffx.27992.1.S1_at--78--9791Chr06:22939378..22939402 (25 bp)
TAACCTGTCTAGTAGTCTTGAGCAC
LOC_Os06g38640
OsAffx.27992.1.S1_at--952--2491Chr06:22939418..22939442 (25 bp)
AACATGATTTCTGGGCTTATACCAC
LOC_Os06g38640
OsAffx.27992.1.S1_at--140--7991Chr06:22939483..22939507 (25 bp)
GGATGACAATTATTTAACCGGCAAT
LOC_Os06g38640
OsAffx.27992.1.S1_at--970--6511Chr06:22939596..22939620 (25 bp)
GATATTTACACAGCATGGTCTTCCT
LOC_Os06g38640
OsAffx.27992.1.S1_at--23--3651Chr06:22939615..22939639 (25 bp)
CTTCCTGTCCTTTTCACACAACAGA
LOC_Os06g38640
OsAffx.27992.1.S1_at--412--8251Chr06:22939658..22939682 (25 bp)
GGCACTATAGGCAACCTTGTTCAAC
LOC_Os06g38640
OsAffx.27992.1.S1_at--422--9011Chr06:22939683..22939707 (25 bp)
TGAATGAACTGCGTCTTGATGAGAA
LOC_Os06g38640
OsAffx.27992.1.S1_at--682--311Chr06:22939724..22939748 (25 bp)
ATACCTGCGAGTATACGTCACTGCA
LOC_Os06g38640
OsAffx.27992.1.S1_at--898--7091Chr06:22939740..22939764 (25 bp)
GTCACTGCACTCAACTCACAAAACT
LOC_Os06g38640
Target Sequence 
TGCTCCAAATTGACTCAACTGCTTCTGGATGGGAATAATCTTCAAGGGAACCTACCAAGTTGTATTGGTAACCTGTCTAG
TAGTCTTGAGCACTTGTGGCTAAGAAATAACATGATTTCTGGGCTTATACCACCAGGGATTGGCAACCTTAAGAGTTTGA
ATACGTTGTACATGGATGACAATTATTTAACCGGCAATATACCACCCACAATTGGATATTTACACAACATGAATAAGTTG
TACATGGATTACAATTATTTAACCGGCAATATACCACCTACAATTGGATATTTACACAGCATGGTCTTCCTGTCCTTTTC
ACACAACAGACTCTCTGGGCAAATCCCTGGCACTATAGGCAACCTTGTTCAACTGAATGAACTGCGTCTTGATGAGAATA
ACTTGAGTGGAAGCATACCTGCGAGTATACGTCACTGCACTCAACTCACAAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis