Browse Element(s) Details


OsAffx.5048.1.S1_at

Description tigr:9634.m03685
TID=OsAffx.5048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3865011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38620NANA6+22925246..22928586retrotransposon protein, putative, unclassified
LOC_Os06g38629NANA6+22935861..22936325NA
LOC_Os06g38640OsAffx.27992.1.S1_at11/116+22937993..22939810Leucine Rich Repeat family protein
LOC_Os06g38650OsAffx.5048.1.S1_at11/116+22950399..22953848Leucine Rich Repeat family protein, expressed
LOC_Os06g38660OsAffx.5049.1.S1_s_at11/116+22955672..22956310expressed protein
LOC_Os06g38660Os.7966.1.S1_at11/116+22955672..22956310expressed protein
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed
LOC_Os06g38680Os.49927.1.S1_at11/116+22966819..22970854expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5048.1.S1_at--912--1971Chr06:22953207..22953231 (25 bp)
ACTCCACTCGTACATTGCGACTTGA
LOC_Os06g38650
OsAffx.5048.1.S1_at--98--5151Chr06:22953238..22953262 (25 bp)
GCAACATTCTTTTAGGCCCTGACAT
LOC_Os06g38650
OsAffx.5048.1.S1_at--744--10351Chr06:22953247..22953271 (25 bp)
TTTTAGGCCCTGACATGGTTGCATA
LOC_Os06g38650
OsAffx.5048.1.S1_at--1040--751Chr06:22953271..22953295 (25 bp)
ATGTCAGTGATTTCGGTCTAGCAAG
LOC_Os06g38650
OsAffx.5048.1.S1_at--500--672Chr06:22953601..22953625 (25 bp)
ATGACGGTACAAGCCTGCGTGATCT
LOC_Os06g38650
OsAffx.5048.1.S1_at--544--8832Chr06:22953620..22953644 (25 bp)
TGATCTTGTCGCTAGTAACTTTCCC
LOC_Os06g38650
OsAffx.5048.1.S1_at--1122--2551Chr06:22953698..22953722 (25 bp)
AACTGAGGTGCTGCAGAGTTGCGTT
LOC_Os06g38650
OsAffx.5048.1.S1_at--755--6051Chr06:22953713..22953737 (25 bp)
GAGTTGCGTTATTCTGTTGGTCAGA
LOC_Os06g38650
OsAffx.5048.1.S1_at--879--1472Chr06:22953735..22953759 (25 bp)
AGAATAGGACTCTCTTGCTCCATGA
LOC_Os06g38650
OsAffx.5048.1.S1_at--821--10511Chr06:22953761..22953785 (25 bp)
TTCACCCAAACACCGATGCGAAATG
LOC_Os06g38650
OsAffx.5048.1.S1_at--361--6851Chr06:22953792..22953816 (25 bp)
GTTTGTACTGAGATCCTTGGAATCA
LOC_Os06g38650
Target Sequence 
ACTCCACTCGTACATTGCGACTTGAAGCCAAGCAACATTCTTTTAGGCCCTGACATGGTTGCATATGTCAGTGATTTCGG
TCTAGCAAGATTCATATGCACAAGATCAAATTCAGATCAAGATAGTTTAACAAGTTTGTATTGCCTAAAAGGATCAATCG
GATACATCCCACCAGAGTATGGCATGAGCGAAGAGAGATCAACAAAGGGTGACGTCTATAGTTTTGGAGTGCTTCTTCTG
GAAATGGTCACAAATATTAGTCCGACAGAAGAAATATTTAATGACGGTACAAGCCTGCGTGATCTTGTCGCTAGTAACTT
TCCCAAAGATACATTCAAGGTTGTTGATCCCACCATGCTACAAGATGAGATCGATGCAACTGAGGTGCTGCAGAGTTGCG
TTATTCTGTTGGTCAGAATAGGACTCTCTTGCTCCATGACTTCACCCAAACACCGATGCGAAATGGGACAAGTTTGTACT
GAGATCCTTGGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis