Browse Element(s) Details


Os.49927.1.S1_at

Description gb:AK119379.1
DB_XREF= gi:37989002
TID=Os.49927.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-B02, full insert sequence.
FL= gb:AK119379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38650OsAffx.5048.1.S1_at11/116+22950399..22953848Leucine Rich Repeat family protein, expressed
LOC_Os06g38660OsAffx.5049.1.S1_s_at11/116+22955672..22956310expressed protein
LOC_Os06g38660Os.7966.1.S1_at11/116+22955672..22956310expressed protein
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed
LOC_Os06g38680Os.49927.1.S1_at11/116+22966819..22970854expressed protein
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38710OsAffx.27993.1.S1_at11/116+22982848..22983680hypothetical protein
LOC_Os06g38720OsAffx.15824.1.S1_at11/116+22987756..22988115hypothetical protein
LOC_Os06g38730OsAffx.27995.1.S1_at1/116+22991414..22994906Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49927.1.S1_at--999--5451Chr06:22967517..22967541 (25 bp)
GAACTGAACAGCCTTGTGCCTTGCC
LOC_Os06g38680
Os.49927.1.S1_at--70--4451Chr06:22967500..22967524 (25 bp)
GCCTTGCCGGACTAGCTACAACGAA
LOC_Os06g38680
Os.49927.1.S1_at--1091--9291Chr06:22967180..22967204 (25 bp)
TCCGCCGATGGATCCGAGTGACGAG
LOC_Os06g38680
Os.49927.1.S1_at--492--6091Chr06:22967165..22967189 (25 bp)
GAGTGACGAGGGTCGTTACTTCCCT
LOC_Os06g38680
Os.49927.1.S1_at--407--3312Chr06:22967139..22967163 (25 bp)
CACACCGGCTTCCTGAGTATCTGAA
LOC_Os06g38680
Os.49927.1.S1_at--1151--4232Chr06:22967075..22967099 (25 bp)
CCGTCCTCCATTACCAGAAGATTGT
LOC_Os06g38680
Os.49927.1.S1_at--588--1251Chr06:22967057..22967081 (25 bp)
AGATTGTCGAGTCGTCGTCAAGCTG
LOC_Os06g38680
Os.49927.1.S1_at--823--1351Chr06:22967014..22967038 (25 bp)
AGAGCAGTTACCTACCTACTGGATA
LOC_Os06g38680
Os.49927.1.S1_at--733--9911Chr06:22966991..22967015 (25 bp)
TACTGCGTTACATCTACGTGTACCG
LOC_Os06g38680
Os.49927.1.S1_at--1160--6471Chr06:22966940..22966964 (25 bp)
GATACTCCGGATACTGTGACCAGTG
LOC_Os06g38680
Os.49927.1.S1_at--728--9811Chr06:22966913..22966937 (25 bp)
TAAATCCCAGGCATTAGCCCGGTTT
LOC_Os06g38680
Target Sequence 
GAACTGAACAGCCTTGTGCCTTGCCGGACTAGCTACAACGAATGGCATTCGCCGACAGCTCCGCCGCCTCCGCTTTCCCG
GCGTCCGCTTCAGCCGGCGATCCTCCAGCTGCACCGGTGGCCGTTCCAGGCGGCAACCTTCCAGCTGCTCCGGTCGTCAA
TCCTCCTGCTGCAAAGTCTCCAGCAGCCGCTCCAGATCCGCCGATGGATCCGAGTGACGAGGGTCGTTACTTCCCTACAC
ACCGGCTTCCTGAGTATCTGAAGAATCATCCCTGAGAGACTACAGGGACGTGCTGGGAGAACCGTCCTCCATTACCAGAA
GATTGTCGAGTCGTCGTCAAGCTGCAAGCATTGCTAACTGCTAGAGCAGTTACCTACCTACTGGATACTGCGTTACATCT
ACGTGTACCGCAGGATAGATTGTAATGTTGTTTTCAGATACTCCGGATACTGTGACCAGTGAATAAATCCCAGGCATTAG
CCCGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis