Browse Element(s) Details


OsAffx.28002.1.S1_at

Description tigr:9634.m03734
TID=OsAffx.28002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3910011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39070NANA6+23195393..23196850UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os06g39080NANA6+23203563..23205056UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090OsAffx.24317.5.S1_x_at11/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.5.S1_at10/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.3.S1_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.55262.1.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.6.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.27015.2.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.31512.1.S1_x_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.49703.1.S1_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39100OsAffx.28002.1.S1_at11/116+23216726..23216998hypothetical protein
LOC_Os06g39110Os.8503.1.S1_at11/116+23226138..23227392expressed protein
LOC_Os06g39120Os.37051.1.S1_at11/116+23231538..23232572expressed protein
LOC_Os06g39130NANA6+23236937..23237373hypothetical protein
LOC_Os06g39140Os.12297.1.S1_at10/116+23240330..23242269protozoan/cyanobacterial globin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28002.1.S1_at--166--1953Chr09:6654485..6654509 (25 bp)
ACGGCGAGCGATACGGACGGATGCG
NONE
OsAffx.28002.1.S1_at--875--311Chr06:23216883..23216907 (25 bp)
ATACGGACGGATGCGGGCAAGGCAG
LOC_Os06g39100
OsAffx.28002.1.S1_at--9--2933Chr09:6654531..6654571 (25 bp)
AAGGAATAGCCTACGATGTGAACCG
NONE
OsAffx.28002.1.S1_at--617--8213Chr09:6654263..6654573 (25 bp)
GGAATAGCCTACGATGTGAACCGAT
NONE
OsAffx.28002.1.S1_at--521--3093Chr09:6654265..6654575 (25 bp)
AATAGCCTACGATGTGAACCGATGC
NONE
OsAffx.28002.1.S1_at--559--9993Chr09:6654556..6654577 (22 bp)
TAGCCTACGATGTGAACCGATGCGA
NONE
OsAffx.28002.1.S1_at--854--4454Chr09:6654556..6654579 (24 bp)
GCCTACGATGTGAACCGATGCGAAC
NONE
OsAffx.28002.1.S1_at--547--3713Chr09:6654557..6654581 (25 bp)
CTACGATGTGAACCGATGCGAACCG
NONE
OsAffx.28002.1.S1_at--132--1894Chr09:6654559..6654583 (25 bp)
ACGATGTGAACCGATGCGAACCGAA
NONE
OsAffx.28002.1.S1_at--214--6273Chr09:6654561..6654585 (25 bp)
GATGTGAACCGATGCGAACCGAAGA
NONE
OsAffx.28002.1.S1_at--798--734Chr09:6654562..6654586 (25 bp)
ATGTGAACCGATGCGAACCGAAGAT
NONE
Target Sequence 
ACGGCGAGCGATACGGACGGATGCGGGCAAGGCAGCGACGCCGGGGAAGGAATAGCCTACGATGTGAACCGATGCGAACC
GAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis