Browse Element(s) Details


OsAffx.28132.1.S1_at

Description tigr:9634.m04516
TID=OsAffx.28132.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g464308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed
LOC_Os06g46460OsAffx.28133.1.S1_at11/116+28202819..28203372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28132.1.S1_at--1052--2971Chr06:28176465..28176489 (25 bp)
AATGTCCTTGATGCAATCAAATCTT
LOC_Os06g46430
OsAffx.28132.1.S1_at--890--3291NONE
CAAATCTTTAGATATCTGGTCAACA
NONE
OsAffx.28132.1.S1_at--565--10131Chr06:28177148..28177171 (24 bp)
TATCTGGTCAACAAATAGTCAAGCG
LOC_Os06g46430
OsAffx.28132.1.S1_at--241--7091Chr06:28177153..28177177 (25 bp)
GTCAACAAATAGTCAAGCGCCTCAA
LOC_Os06g46430
OsAffx.28132.1.S1_at--818--2191Chr06:28177157..28177181 (25 bp)
ACAAATAGTCAAGCGCCTCAAGTTG
LOC_Os06g46430
OsAffx.28132.1.S1_at--197--10071Chr06:28177162..28177186 (25 bp)
TAGTCAAGCGCCTCAAGTTGATATC
LOC_Os06g46430
OsAffx.28132.1.S1_at--997--9711Chr06:28177165..28177189 (25 bp)
TCAAGCGCCTCAAGTTGATATCTCT
LOC_Os06g46430
OsAffx.28132.1.S1_at--607--6511Chr06:28177181..28177205 (25 bp)
GATATCTCTGAAAAGATAGCTCCAT
LOC_Os06g46430
OsAffx.28132.1.S1_at--715--6491Chr06:28177195..28177215 (21 bp)
GATAGCTCCATCATTGCAGGTGTGT
LOC_Os06g46430
OsAffx.28132.1.S1_at--359--10011NONE
TAGCTCCATCATTGCAGGTGTGTTG
NONE
OsAffx.28132.1.S1_at--652--4311NONE
CCATCATTGCAGGTGTGTTGGAGAG
NONE
Target Sequence 
AATGTCCTTGATGCAATCAAATCTTTAGATATCTGGTCAACAAATAGTCAAGCGCCTCAAGTTGATATCTCTGAAAAGAT
AGCTCCATCATTGCAGGTGTGTTGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis