Browse Element(s) Details


OsAffx.2816.1.S1_at

Description tigr:9630.m02976
TID=OsAffx.2816.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3102011/11hypothetical protein
LOC_Os06g077902/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30974Os.8606.1.S1_at11/112+18495365..18503763expressed protein
LOC_Os02g30990NANA2+18504922..18508694retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31000Os.56299.1.S1_at4/112+18509668..18512734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31010Os.33661.2.S1_at2/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.11537.1.S1_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.17040.2.S1_x_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31020OsAffx.2816.1.S1_at11/112+18521053..18524165hypothetical protein
LOC_Os02g31030Os.36104.1.S1_at11/112+18531301..18534920glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
LOC_Os02g31040OsAffx.24519.1.S1_at11/112+18540823..185463662-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase family protein, expressed
LOC_Os02g31050OsAffx.12302.1.S1_at10/112+18547487..18548899hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2816.1.S1_at--1155--8151Chr02:18522211..18522235 (25 bp)
GGAAAACATTTACATTCAGTAGCAG
LOC_Os02g31020
OsAffx.2816.1.S1_at--268--9891Chr02:18522201..18522225 (25 bp)
TACATTCAGTAGCAGATCTGGTGAC
LOC_Os02g31020
OsAffx.2816.1.S1_at--565--2211Chr02:18522132..18522156 (25 bp)
ACAACCTTTTTCCATAAGGCTGCAA
LOC_Os02g31020
OsAffx.2816.1.S1_at--982--8152Chr06:3783172..3783191 (20 bp)
GGAAAAGCCATATCTTCTCTCTGCA
LOC_Os06g07790
OsAffx.2816.1.S1_at--1003--2651Chr02:18522092..18522116 (25 bp)
AAGCCATATCTTCTCTCTGCAAGAA
LOC_Os02g31020
OsAffx.2816.1.S1_at--555--3771Chr02:18522080..18522104 (25 bp)
CTCTCTGCAAGAAGGGATGTTAATA
LOC_Os02g31020
OsAffx.2816.1.S1_at--1096--6271Chr02:18522065..18522089 (25 bp)
GATGTTAATATCATAGAGCTCTCAC
LOC_Os02g31020
OsAffx.2816.1.S1_at--317--3551Chr02:18522054..18522078 (25 bp)
CATAGAGCTCTCACAAATTAAACAG
LOC_Os02g31020
OsAffx.2816.1.S1_at--155--6931Chr02:18521986..18522010 (25 bp)
GTAGGGAAGTTCATCTAAGTCCTGA
LOC_Os02g31020
OsAffx.2816.1.S1_at--491--9532Chr06:3783286..3783310 (25 bp)
TCTAAGTCCTGAAATCTGGCAAGAT
LOC_Os06g07790
OsAffx.2816.1.S1_at--1074--3511Chr02:18521525..18521549 (25 bp)
CATGAGGTGATGCTTGAGCTGAAAA
LOC_Os02g31020
Target Sequence 
GGAAAACATTTACATTCAGTAGCAGATCTGGTGACAGAGAAGAGGAGGGGAAACTTGGATTTTACAAGGAGATGCTAATA
CAACCTTTTTCCATAAGGCTGCAAATCAAGAAAAAGGAAAAGCCATATCTTCTCTCTGCAAGAAGGGATGTTAATATCAT
AGAGCTCTCACAAATTAAACAGCACATCTATGCATATTATAAGGGGTTGTTTGGAAAAGAAAAAAGTAGGGAAGTTCATC
TAAGTCCTGAAATCTGGCAAGATAAGCTGAGATTGACTGGGGAGGAAAAAGTTTGGATGGCTATGAATTTTAGGATGACT
GAAGTGGCAAACAAAGTGATTAGTTGGTCTCAAACTGCCTTTATACCTGGAAGGAATATTTTAGAAGGTTGTGTTATTTT
ACATGAGGTGATGCTTGAGCTGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis