Browse Element(s) Details


OsAffx.2823.1.S1_x_at

Description tigr:9630.m03025
TID=OsAffx.2823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3200011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31970NANA2+18891680..18896222retrotransposon protein, putative, unclassified
LOC_Os02g31980OsAffx.12311.1.S1_x_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31980OsAffx.12311.1.S1_at11/112+18896745..18897044proton-dependent oligopeptide transport, putative
LOC_Os02g31990NANA2+18897951..18898370hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32000OsAffx.2823.1.S1_x_at11/112+18899590..18899823hypothetical protein
LOC_Os02g32009NANA2+18903070..18903450NA
LOC_Os02g32020OsAffx.12312.1.S1_at9/112+18905133..18907062expressed protein
LOC_Os02g32030Os.4705.1.S1_at11/112+18911065..18915987Elongation factor 2, putative, expressed
LOC_Os02g32040NANA2+18917753..18918472AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2823.1.S1_x_at--160--7851Chr02:18899643..18899667 (25 bp)
GGATACGGCGGTGTTGACCTTGGCG
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--66--3971Chr02:18899651..18899675 (25 bp)
CGGTGTTGACCTTGGCGGAGGACAA
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--1101--3951Chr02:18899666..18899690 (25 bp)
CGGAGGACAAGAACACCACATGCCT
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--420--1691Chr02:18899680..18899704 (25 bp)
ACCACATGCCTCTCCCGGGTGAAGG
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--761--9491Chr02:18899690..18899714 (25 bp)
TCTCCCGGGTGAAGGCTACGGTGTT
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--1015--10031Chr02:18899717..18899741 (25 bp)
TAGAGGATGGCGTCCCTAGAGAGCC
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--250--991Chr02:18899720..18899744 (25 bp)
AGGATGGCGTCCCTAGAGAGCCCCA
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--676--10031Chr02:18899733..18899757 (25 bp)
TAGAGAGCCCCACGACATGCTGCTG
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--525--1671Chr02:18899738..18899762 (25 bp)
AGCCCCACGACATGCTGCTGGAGAT
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--1066--591Chr02:18899761..18899785 (25 bp)
ATGCGGGAAAATGTTGAAGGCCACG
LOC_Os02g32000
OsAffx.2823.1.S1_x_at--541--5511Chr02:18899767..18899791 (25 bp)
GAAAATGTTGAAGGCCACGACGTCA
LOC_Os02g32000
Target Sequence 
GGATACGGCGGTGTTGACCTTGGCGGAGGACAAGAACACCACATGCCTCTCCCGGGTGAAGGCTACGGTGTTGGTAGAGG
ATGGCGTCCCTAGAGAGCCCCACGACATGCTGCTGGAGATGCGGGAAAATGTTGAAGGCCACGACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2823.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis