Browse Element(s) Details


OsAffx.28260.1.S1_at

Description tigr:9635.m00360
TID=OsAffx.28260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0429010/11hypothetical protein
LOC_Os06g306902/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein
LOC_Os07g04280OsAffx.5203.1.S1_at11/117+1891293..1892384expressed protein
LOC_Os07g04290OsAffx.28260.1.S1_at10/117+1893530..1894637hypothetical protein
LOC_Os07g04300OsAffx.5204.1.S1_at11/117+1895915..1896256hypothetical protein
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein
LOC_Os07g04320OsAffx.28261.1.S1_at11/117+1904633..1905040hypothetical protein
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28260.1.S1_at--956--7611Chr07:1893567..1893591 (25 bp)
GGGAACTAGAGTGCTCATCAAGCAT
LOC_Os07g04290
OsAffx.28260.1.S1_at--1146--4811Chr07:1893579..1893603 (25 bp)
GCTCATCAAGCATGGAGGAATGGTC
LOC_Os07g04290
OsAffx.28260.1.S1_at--625--371Chr07:1893583..1893607 (25 bp)
ATCAAGCATGGAGGAATGGTCCACG
LOC_Os07g04290
OsAffx.28260.1.S1_at--1129--931NONE
AGGAATGGTCCACGGACTGCGGCGG
NONE
OsAffx.28260.1.S1_at--107--7612Chr07:1894354..1894378 (25 bp)
GGGACTACACATCCTTCGAGGGTCT
LOC_Os07g04290
OsAffx.28260.1.S1_at--195--5712Chr07:1894356..1894380 (25 bp)
GACTACACATCCTTCGAGGGTCTGT
LOC_Os07g04290
OsAffx.28260.1.S1_at--960--9851Chr07:1894359..1894383 (25 bp)
TACACATCCTTCGAGGGTCTGTCGA
LOC_Os07g04290
OsAffx.28260.1.S1_at--962--3531Chr07:1894363..1894387 (25 bp)
CATCCTTCGAGGGTCTGTCGATGAA
LOC_Os07g04290
OsAffx.28260.1.S1_at--1156--9211Chr07:1894365..1894389 (25 bp)
TCCTTCGAGGGTCTGTCGATGAACC
LOC_Os07g04290
OsAffx.28260.1.S1_at--278--3651Chr07:1894367..1894391 (25 bp)
CTTCGAGGGTCTGTCGATGAACCAG
LOC_Os07g04290
OsAffx.28260.1.S1_at--719--7631Chr07:1894557..1894581 (25 bp)
GGGACGGCCAGCTGTGGCGGTGGAG
LOC_Os07g04290
Target Sequence 
GGGAACTAGAGTGCTCATCAAGCATGGAGGAATGGTCCACGGACTGCGGCGGGGGCGTGGCAGCCGCGGTGCTCGCCGGG
GCCGGCCACAAGGTGGTGGTCATCGAGAAGGGCAACTACTTCACGTCGCGGGACTACACATCCTTCGAGGGTCTGTCGAT
GAACCAGCTCTACGAGTCTGGTGGGTTCGTCACCACGATGAACGGCGGCGGGCTGCTCCTGGCCGGATCCACGGTCGGCC
TGCCTCAAGACGCCCGAGTTCGTGCTCAGGGAGTGGGCGGCCGCGCACGGGCTCCCGCTGCACAGGCGGGGACGGGCGAG
GCGAGCGTGGCGGGGACGGCCAGCTGTGGCGGTGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis