Browse Element(s) Details


Os.11006.1.S1_at

Description gb:AK064609.1
DB_XREF= gi:32974627
TID=Os.11006.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-A12, full insert sequence.
FL= gb:AK064609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0433010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein
LOC_Os07g04280OsAffx.5203.1.S1_at11/117+1891293..1892384expressed protein
LOC_Os07g04290OsAffx.28260.1.S1_at10/117+1893530..1894637hypothetical protein
LOC_Os07g04300OsAffx.5204.1.S1_at11/117+1895915..1896256hypothetical protein
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein
LOC_Os07g04320OsAffx.28261.1.S1_at11/117+1904633..1905040hypothetical protein
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein
LOC_Os07g04340Os.57039.1.S1_at11/117+1924015..1925341expressed protein
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11006.1.S1_at--463--2131Chr07:1912094..1912118 (25 bp)
ACAGCTCCTACTGATCAAGGTCGAG
LOC_Os07g04330
Os.11006.1.S1_at--269--5071Chr07:1912172..1912196 (25 bp)
GCAGCTCGGAGGATGTTCACCAGGT
LOC_Os07g04330
Os.11006.1.S1_at--717--7291Chr07:1912230..1912254 (25 bp)
GTGCCCTTTTCGTTGTGTCGTCTAT
LOC_Os07g04330
Os.11006.1.S1_at--30--9951Chr07:1912292..1912316 (25 bp)
TACGACTAGGAGCTCTATCGCCAGC
LOC_Os07g04330
Os.11006.1.S1_at--659--7531Chr07:1912319..1912343 (25 bp)
GTGGCTACATATTTCTGTCTCTGTG
LOC_Os07g04330
Os.11006.1.S1_at--357--9471Chr07:1912338..1912362 (25 bp)
TCTGTGTTATCTATGACTCTGCCCT
LOC_Os07g04330
Os.11006.1.S1_at--435--4191Chr07:1912359..1912383 (25 bp)
CCCTGCTTATCATGGCTTGTTTAAT
LOC_Os07g04330
Os.11006.1.S1_at--889--3491Chr07:1912388..1912412 (25 bp)
CATGGCATTTCCTACTAATCATCGA
LOC_Os07g04330
Os.11006.1.S1_at--877--7051Chr07:1912474..1912498 (25 bp)
GTAACGCCGTTACTTCATGGTATTT
LOC_Os07g04330
Os.11006.1.S1_at--29--311Chr07:1912522..1912546 (25 bp)
ATACGGTTTCTATAGTTTTGCTCTG
LOC_Os07g04330
Os.11006.1.S1_at--333--48126Chr12:16692184..16692209 (24 bp)
GCTCTGTGATCAGTTTAGTCCCTAA
NONE
Target Sequence 
ACAGCTCCTACTGATCAAGGTCGAGTCAGTTATTTTGAAGAAAATCCTGAGCTTTTTGCTGAATTGGTGAAACGAGATGC
AGCTCGGAGGATGTTCACCAGGTTGGTGCTGGCGGGTGCTGCTTCAGCGTACGCTGGTGCCCTTTTCGTTGTGTCGTCTA
TGCGCGATAGCGTGAAGGAAGAGCTTCGCAAAAACATCTACGACTAGGAGCTCTATCGCCAGCTGGTGGCTACATATTTC
TGTCTCTGTGTTATCTATGACTCTGCCCTGCTTATCATGGCTTGTTTAATGTAACATGGCATTTCCTACTAATCATCGAT
GTGTAACGTACCATCGTACTATAGTTGCACTCTATAATAGTTTGTGATGGTTGGTTGGTAGTAACGCCGTTACTTCATGG
TATTTTTGGATAGACTGGTGAATAGCCAATACGGTTTCTATAGTTTTGCTCTGTGATCAGTTTAGTCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis