Browse Element(s) Details


OsAffx.16079.1.S1_at

Description tigr:9635.m00368
TID=OsAffx.16079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0437011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein
LOC_Os07g04340Os.57039.1.S1_at11/117+1924015..1925341expressed protein
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative
LOC_Os07g04420Os.54102.1.S1_x_at9/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.53654.1.S1_at3/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.27698.1.A1_x_at1/117+1954422..1957966hypothetical protein
LOC_Os07g04430NANA7+1958813..1962780expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16079.1.S1_at--1040--2131Chr07:1937116..1937140 (25 bp)
ACAGTTGGCTTCATCATTGCCGTCT
LOC_Os07g04370
OsAffx.16079.1.S1_at--565--2011Chr07:1937172..1937196 (25 bp)
ACTCTTCATGAGTGTGCTGTTTGCA
LOC_Os07g04370
OsAffx.16079.1.S1_at--43--5871Chr07:1937204..1937228 (25 bp)
GAGCCAAGCAATTCCTGCACAGTGA
LOC_Os07g04370
OsAffx.16079.1.S1_at--125--5371Chr07:1937274..1937298 (25 bp)
GAAGACCCAGGAGTTTCTCAGGAAC
LOC_Os07g04370
OsAffx.16079.1.S1_at--417--10331Chr07:1937305..1937329 (25 bp)
TTTCATCAGATTGTCGAGGGCTACG
LOC_Os07g04370
OsAffx.16079.1.S1_at--264--4151Chr07:1937370..1937394 (25 bp)
CGCGATCCGGAAGCGCTTCTTGAAG
LOC_Os07g04370
OsAffx.16079.1.S1_at--375--7651Chr07:1937414..1937438 (25 bp)
GGGAGTACATCGTCCACAAGACCAC
LOC_Os07g04370
OsAffx.16079.1.S1_at--268--1711Chr07:1937434..1937458 (25 bp)
ACCACATTTGGTTCTCAGAGGGACA
LOC_Os07g04370
OsAffx.16079.1.S1_at--977--2211Chr07:1937456..1937480 (25 bp)
ACAAGATTGCCAGCTGGTTTCGCCG
LOC_Os07g04370
OsAffx.16079.1.S1_at--1147--10291Chr07:1937473..1937497 (25 bp)
TTTCGCCGCGACAAGCAGCAAGAGG
LOC_Os07g04370
OsAffx.16079.1.S1_at--233--3211Chr07:1937604..1937628 (25 bp)
CAAGGAGACGAAGCCAGCCGAGCCA
LOC_Os07g04370
Target Sequence 
ACAGTTGGCTTCATCATTGCCGTCTTGCTGTGTTTTGCCATCATCCTGGGGGTTTTACTCTTCATGAGTGTGCTGTTTGC
AGAGTGGAGAGCCAAGCAATTCCTGCACAGTGAAGAGTGTGACAGGCTGACGGATGGGATGATGGATAAAGCTGAGATGA
AGACCCAGGAGTTTCTCAGGAACAACAATTTTCATCAGATTGTCGAGGGCTACGTGAGCGAGGGGTTGGAATTGGCGACT
GGGGAGGAGGTGCGCGCGATCCGGAAGCGCTTCTTGAAGGAAGCTCTTCAAGATACCGGGGAGTACATCGTCCACAAGAC
CACATTTGGTTCTCAGAGGGACAAGATTGCCAGCTGGTTTCGCCGCGACAAGCAGCAAGAGGCGCCATCACCATCAGCAA
CAGCACTGACCAAGGACAGCGAGTCCACTGTGGGCGTGGTGGAGAAGGTGAGGATGAGGGATCGAGTGGCTGCCTGGTTC
CGCCGCAACAAGGAGACGAAGCCAGCCGAGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis