Browse Element(s) Details


Os.40384.1.S1_at

Description gb:CF326803
DB_XREF= gi:33801862
DB_XREF=NACL--01-A13.g1
CLONE=NACL--01-A13
TID=Os.40384.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40384 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0435011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein
LOC_Os07g04320OsAffx.28261.1.S1_at11/117+1904633..1905040hypothetical protein
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein
LOC_Os07g04340Os.57039.1.S1_at11/117+1924015..1925341expressed protein
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40384.1.S1_at--852--9151Chr07:1928585..1928609 (25 bp)
TGCGCTCTCTCGTGAGGAAGGTCAT
LOC_Os07g04350
Os.40384.1.S1_at--843--8811Chr07:1928573..1928597 (25 bp)
TGAGGAAGGTCATGCCCGTCCCGGC
LOC_Os07g04350
Os.40384.1.S1_at--112--2511Chr07:1927073..1927097 (25 bp)
AACATCTACGACTAGCAGCTTTACC
LOC_Os07g04350
Os.40384.1.S1_at--777--191Chr07:1927028..1927052 (25 bp)
ATTTCTATTTTTGTGTGTGACTCTG
LOC_Os07g04350
Os.40384.1.S1_at--893--2971Chr07:1926984..1927008 (25 bp)
AATGTGGCATGCATGTGACATGTCT
LOC_Os07g04350
Os.40384.1.S1_at--258--7071Chr07:1926937..1926961 (25 bp)
GTAATGTATTGTTGTTGCACTCTAT
LOC_Os07g04350
Os.40384.1.S1_at--610--5111Chr07:1926921..1926945 (25 bp)
GCACTCTATGCATTGGTACCCTATA
LOC_Os07g04350
Os.40384.1.S1_at--260--6991Chr07:1926906..1926930 (25 bp)
GTACCCTATATATCTGCTGTTTGCA
LOC_Os07g04350
Os.40384.1.S1_at--178--6331Chr07:1926877..1926901 (25 bp)
GATGCTATGAAGTAACGATTTGTTA
LOC_Os07g04350
Os.40384.1.S1_at--485--6791Chr07:1926856..1926880 (25 bp)
GTTATGGATGATCTGTACGCAACAT
LOC_Os07g04350
Os.40384.1.S1_at--887--8731Chr07:1926843..1926867 (25 bp)
TGTACGCAACATTACTTAGGGTTTT
LOC_Os07g04350
Target Sequence 
TGCGCTCTCTCGTGAGGAAGGTCATGCCCGTCCCGGCTGCTCTCCGCCGGGCGCCGCCGTCATCGCGCTCCCTNCACCAC
CTCGAGGATAAGCTGCGTGGCACGACATCTCCCAAGACTACAGCTCCTCCTGGCAATGGCAGGGGCAGCTATTTCAAAGA
CAATCATCCGACTTTTGCTGAATTGGTTCAACGAGATACAGATCGGAGGAGCTTCAACAGGATGTTGGTGGCAGGTNCTG
CTTCAGGCTATGCTGTTGCCCTTGTCATTATGTTATCTCTTCGCCGTAGTGTGAAGGAAGATCTTCGCAATAACATCTAC
GACTAGCAGCTTTACCCACCTGNCTAGGGGCTATTTATTTCTATTTTTGTGTGTGACTCTGNCTATAATGGCATGTGTTT
AATGTGGCATGCATGTGACATGTCTTNATGTAAGACTAATTATCGGTGTAATGTATTGTTGTTGCACTCTATGCATTGGT
ACCCTATATATCTGCTGTTTGCAAGTAGATGCTATGAAGTAACGATTTGTTATGGATGATCTGTACGCAACATTACTTAG
GGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis