Browse Element(s) Details


OsAffx.5202.1.S1_at

Description tigr:9635.m00356
TID=OsAffx.5202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0426010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein
LOC_Os07g04280OsAffx.5203.1.S1_at11/117+1891293..1892384expressed protein
LOC_Os07g04290OsAffx.28260.1.S1_at10/117+1893530..1894637hypothetical protein
LOC_Os07g04300OsAffx.5204.1.S1_at11/117+1895915..1896256hypothetical protein
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5202.1.S1_at--1162--8531Chr07:1877287..1877311 (25 bp)
TGGAGAAGGAGCTCCGCTTCGGATC
LOC_Os07g04260
OsAffx.5202.1.S1_at--701--5791Chr07:1877374..1877398 (25 bp)
GACCAGGAGCCTTGGTCACTCTGGA
LOC_Os07g04260
OsAffx.5202.1.S1_at--932--7091Chr07:1877388..1877412 (25 bp)
GTCACTCTGGACCTGGTTCCAAAGA
LOC_Os07g04260
OsAffx.5202.1.S1_at--226--2351Chr07:1877408..1877432 (25 bp)
AAAGAAGCTCTCGTTTGATCCACTG
LOC_Os07g04260
OsAffx.5202.1.S1_at--268--5451Chr07:1877507..1877531 (25 bp)
GAACGCTCGTCTTTACACTGGTGGA
LOC_Os07g04260
OsAffx.5202.1.S1_at--290--3751NONE
CTCTTTACTCCTGTGGGATTGGCAA
NONE
OsAffx.5202.1.S1_at--750--7151Chr07:1879100..1879124 (25 bp)
GTCTTTGGAGATTTCGCGCTCGCAG
LOC_Os07g04260
OsAffx.5202.1.S1_at--642--4151Chr07:1879114..1879138 (25 bp)
CGCGCTCGCAGCACTCAAGAGATGG
LOC_Os07g04260
OsAffx.5202.1.S1_at--1104--2771Chr07:1879130..1879154 (25 bp)
AAGAGATGGGCCTTCGATTTCCTTC
LOC_Os07g04260
OsAffx.5202.1.S1_at--742--6491Chr07:1879145..1879169 (25 bp)
GATTTCCTTCAGAGTCCGGAGGTGA
LOC_Os07g04260
OsAffx.5202.1.S1_at--62--8951Chr07:1879167..1879191 (25 bp)
TGACTCAGATCCTCAAAACCTTCAT
LOC_Os07g04260
Target Sequence 
TGGAGAAGGAGCTCCGCTTCGGATCACCAGCCATGGCCACGCCCACACCCACCAAAGGCGCCAAAGGAGCTGCCTTTCCG
TGCCCTGGACCAGGAGCCTTGGTCACTCTGGACCTGGTTCCAAAGAAGCTCTCGTTTGATCCACTGCCCGGCGCTGCTGC
AGTCGGTGGCGGCGAGGCTCCCAAGAAGGTGGTCACCTCGTCGCCGTCGTCACCCTCGAAGAACGCTCGTCTTTACACTG
GTGGAGAAATGCTCTTTACTCCTGTGGGATTGGCAATGTTTGGAGTCTTTGGAGATTTCGCGCTCGCAGCACTCAAGAGA
TGGGCCTTCGATTTCCTTCAGAGTCCGGAGGTGACTCAGATCCTCAAAACCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis