Browse Element(s) Details


Os.22581.1.S1_at

Description gb:AK065901.1
DB_XREF= gi:32975919
TID=Os.22581.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013023D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013048I16, full insert sequence.
FL= gb:AK062102.1 gb:AK099460.1 gb:AK072048.1 gb:AK065901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0424011/11succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed
LOC_Os07g04210Os.52843.1.S1_at8/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04210OsAffx.28272.1.S1_at1/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006121biological_processmitochondrial electron transport, succinate to ubiquinone
GO:0009435biological_processNAD biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005749cellular_componentrespiratory chain complex II (sensu Eukaryota)
GO:0000104molecular_functionsuccinate dehydrogenase activity
GO:0008734molecular_functionL-aspartate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22581.1.S1_at--350--5831Chr07:1859847..1859964 (25 bp)
GACCGGAGTCTCATATGGAATTCAG
LOC_Os07g04240
Os.22581.1.S1_at--396--351Chr07:1859775..1859799 (25 bp)
ATAACCATGCACTCAGCAGAGGCTC
LOC_Os07g04240
Os.22581.1.S1_at--490--1451Chr07:1859291..1859315 (25 bp)
AGAAGGTTCGCTTGGCATACAGGCC
LOC_Os07g04240
Os.22581.1.S1_at--158--9871Chr07:1859274..1859298 (25 bp)
TACAGGCCAGTCCACATGAACACAT
LOC_Os07g04240
Os.22581.1.S1_at--803--1111Chr07:1859244..1859268 (25 bp)
AGTGAAGTTGAGTCGTTCCCACCCA
LOC_Os07g04240
Os.22581.1.S1_at--266--3351Chr07:1859225..1859249 (25 bp)
CACCCAAGGCGCGTGTTTATTAGTT
LOC_Os07g04240
Os.22581.1.S1_at--759--10211Chr07:1859208..1859232 (25 bp)
TATTAGTTCGGGATTCACGCAGCGC
LOC_Os07g04240
Os.22581.1.S1_at--1104--1651Chr07:1859188..1859212 (25 bp)
AGCGCCGTAATTCTGTGTGGTGTTA
LOC_Os07g04240
Os.22581.1.S1_at--333--5571Chr07:1859135..1859159 (25 bp)
GAAAGTGCGACCTGAATTCCATCCT
LOC_Os07g04240
Os.22581.1.S1_at--782--9751Chr07:1859053..1859077 (25 bp)
TAATGCTAGTGCCTAACTGGTCCCT
LOC_Os07g04240
Os.22581.1.S1_at--390--1931Chr07:1859038..1859062 (25 bp)
ACTGGTCCCTTCTGGGCAACTTGTA
LOC_Os07g04240
Target Sequence 
GACCGGAGTCTCATATGGAATTCAGATTTGATAGAGACCATTGAGTTGGAAAATCTCTTGATAAATGCATGCATAACCAT
GCACTCAGCAGAGGCTCGGAAGGAAAGCAGAGGAGCTCATGCTCGTGAAGATTTCACGAAAAGAGATGATGAGCAATGGA
TGAAGCACTCGCTGGGGTACTGGGAGAATGAGAAGGTTCGCTTGGCATACAGGCCAGTCCACATGAACACATTGGACAGT
GAAGTTGAGTCGTTCCCACCCAAGGCGCGTGTTTATTAGTTCGGGATTCACGCAGCGCCGTAATTCTGTGTGGTGTTAAT
AATTCAGGGGCTGGGCATTCCTAGCTGAAAGTGCGACCTGAATTCCATCCTCCTTTTTCCCTCGGTATTTTGTGTAATTT
GCTAGAAAAATAAAGGACAAACTCATGCTAATGCTAGTGCCTAACTGGTCCCTTCTGGGCAACTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis