Browse Element(s) Details


OsAffx.5201.1.S1_s_at

Description tigr:9635.m00354
TID=OsAffx.5201.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0424011/11succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed
LOC_Os07g04210Os.52843.1.S1_at8/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04210OsAffx.28272.1.S1_at1/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006121biological_processmitochondrial electron transport, succinate to ubiquinone
GO:0009435biological_processNAD biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005749cellular_componentrespiratory chain complex II (sensu Eukaryota)
GO:0000104molecular_functionsuccinate dehydrogenase activity
GO:0008734molecular_functionL-aspartate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5201.1.S1_s_at--672--7031Chr07:1864354..1864378 (25 bp)
GTACACGGTGGTGGATCACTCGTAT
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--195--3351Chr07:1864351..1864375 (25 bp)
CACGGTGGTGGATCACTCGTATGAC
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--901--3971Chr07:1864349..1864373 (25 bp)
CGGTGGTGGATCACTCGTATGACGC
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--760--7731Chr07:1864345..1864369 (25 bp)
GGTGGATCACTCGTATGACGCGGTC
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--427--7511Chr07:1864344..1864368 (25 bp)
GTGGATCACTCGTATGACGCGGTCG
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--1080--7951Chr07:1864342..1864366 (25 bp)
GGATCACTCGTATGACGCGGTCGTG
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--1138--371Chr07:1864340..1864364 (25 bp)
ATCACTCGTATGACGCGGTCGTGGT
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--976--491Chr07:1864284..1864308 (25 bp)
ATCGGGCTCTCCGAGCACGGGTTCA
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--1113--7571Chr07:1864281..1864305 (25 bp)
GGGCTCTCCGAGCACGGGTTCAACA
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--677--9291Chr07:1864275..1864299 (25 bp)
TCCGAGCACGGGTTCAACACGGCTT
LOC_Os07g04240
OsAffx.5201.1.S1_s_at--655--4231Chr07:1864274..1864298 (25 bp)
CCGAGCACGGGTTCAACACGGCTTG
LOC_Os07g04240
Target Sequence 
GTACACGGTGGTGGATCACTCGTATGACGCGGTCGTGGTGGGAGCCGGCGGCGCGGGGCTCCGTGCGGCGATCGGGCTCT
CCGAGCACGGGTTCAACACGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5201.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis