Browse Element(s) Details


OsAffx.16077.1.S1_at

Description tigr:9635.m00352
TID=OsAffx.16077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0423010/11mitochondrial transcription termination factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed
LOC_Os07g04210Os.52843.1.S1_at8/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04210OsAffx.28272.1.S1_at1/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16077.1.S1_at--725--1051Chr07:1857633..1857657 (25 bp)
AGGTGTGCTGGTGAAGTTTCCGCCT
LOC_Os07g04230
OsAffx.16077.1.S1_at--445--6831Chr07:1857648..1857672 (25 bp)
GTTTCCGCCTGTACTAACTTATAGC
LOC_Os07g04230
OsAffx.16077.1.S1_at--816--3091NONE
AATACGCCCAGTGGTAATATTCCTG
NONE
OsAffx.16077.1.S1_at--688--9271Chr07:1858306..1858330 (25 bp)
TCCTGGGCTGTAGCATTGTGCGCAA
LOC_Os07g04230
OsAffx.16077.1.S1_at--25--9731Chr07:1858345..1858369 (25 bp)
TCAAGTACTTGAGATCGCTGGGCAT
LOC_Os07g04230
OsAffx.16077.1.S1_at--951--3311Chr07:1858374..1858398 (25 bp)
CACTTCGTGCTTGGTCAGATGGTCA
LOC_Os07g04230
OsAffx.16077.1.S1_at--993--191Chr07:1858402..1858426 (25 bp)
ATTTCCCAACGCTTCTCAGGTACAA
LOC_Os07g04230
OsAffx.16077.1.S1_at--756--2431Chr07:1858445..1858469 (25 bp)
AAAATACCAGTACCTGCGGCGCGTC
LOC_Os07g04230
OsAffx.16077.1.S1_at--807--1791Chr07:1858478..1858502 (25 bp)
ACCGCTGATTGATCTCGTCGAGTTC
LOC_Os07g04230
OsAffx.16077.1.S1_at--845--7871Chr07:1858609..1858633 (25 bp)
GGTTTTTCAGCTACTCTTTGGAGGA
LOC_Os07g04230
OsAffx.16077.1.S1_at--96--8891Chr07:1858778..1858802 (25 bp)
TGAGGCATCAGATTCGCAGGCGACT
LOC_Os07g04230
Target Sequence 
AGGTGTGCTGGTGAAGTTTCCGCCTGTACTAACTTATAGCCTATACAAGAAAATACGCCCAGTGGTAATATTCCTGATGA
CGAAAGCCGCAGTAAAACAGGAGGACATCGGCAAGGTCATTGCCCTGGATCCACAGCTCCTGGGCTGTAGCATTGTGCGC
AAGCTGGAAGTCAGCGTCAAGTACTTGAGATCGCTGGGCATCTACCACTTCGTGCTTGGTCAGATGGTCACCGATTTCCC
AACGCTTCTCAGGTACAACGTGGATGTTCTAAGGCCAAAATACCAGTACCTGCGGCGCGTCATGGTGCGACCGCTGATTG
ATCTCGTCGAGTTCCCCCGGTTTTTCAGCTACTCTTTGGAGGACAGGATAGTGCCAAGGCACCAAACATTGGTGGAGAAC
AGGATCAACATGAAGCTGAGATACATGCTAACTGGATCTGACGAAGATTTTTCACAAAGGGTACGAGAAGCTGTTGAGAG
GAGAGCCAGATTTGAAGCTGGAAATGTTGAGGCATCAGATTCGCAGGCGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis