Browse Element(s) Details


OsAffx.28258.1.S1_at

Description tigr:9635.m00351
TID=OsAffx.28258.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0422011/11wound and phytochrome signaling involved receptor like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed
LOC_Os07g04210Os.52843.1.S1_at8/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04210OsAffx.28272.1.S1_at1/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28258.1.S1_at--69--8431Chr07:1853820..1853844 (25 bp)
GGCCATGGCAATCGTCGCGAAGACA
LOC_Os07g04220
OsAffx.28258.1.S1_at--347--5671Chr07:1853841..1853865 (25 bp)
GACATGCCTGAATTCAAAGCCATCA
LOC_Os07g04220
OsAffx.28258.1.S1_at--1059--9431Chr07:1853880..1853904 (25 bp)
TCGGTACGTTCTGAGAGCCCTGGAG
LOC_Os07g04220
OsAffx.28258.1.S1_at--395--1671Chr07:1853895..1853919 (25 bp)
AGCCCTGGAGAACCCGCTAAAGATT
LOC_Os07g04220
OsAffx.28258.1.S1_at--630--9831Chr07:1853912..1853936 (25 bp)
TAAAGATTCTGCGAATGGCGTCCCG
LOC_Os07g04220
OsAffx.28258.1.S1_at--351--6971Chr07:1854009..1854033 (25 bp)
GTACCAGAGCCTTGAAACCGCGTCG
LOC_Os07g04220
OsAffx.28258.1.S1_at--493--1791Chr07:1854025..1854049 (25 bp)
ACCGCGTCGTCGTCAGGGCAAATGC
LOC_Os07g04220
OsAffx.28258.1.S1_at--879--1331Chr07:1854090..1854114 (25 bp)
AGAGACTTCCTTCTCCTTCAAGAGG
LOC_Os07g04220
OsAffx.28258.1.S1_at--908--1331Chr07:1854110..1854134 (25 bp)
AGAGGGCTTCCAGGGAGATTGCTCC
LOC_Os07g04220
OsAffx.28258.1.S1_at--669--311Chr07:1854216..1854240 (25 bp)
ATACCTGTGTATAATCTGATCTTCT
LOC_Os07g04220
OsAffx.28258.1.S1_at--1--7851Chr07:1854362..1854386 (25 bp)
GGTACTTGATGTTCTCATTGTGCAC
LOC_Os07g04220
Target Sequence 
GGCCATGGCAATCGTCGCGAAGACATGCCTGAATTCAAAGCCATCAAGGCGGCCTTCTGCTCGGTACGTTCTGAGAGCCC
TGGAGAACCCGCTAAAGATTCTGCGAATGGCGTCCCGCTCCAATTCAGCAAGACTCAGGAGCTCATCATCCCGGAGCTCC
TGGCAGTCTGCTTTCCTTCAAGGAAACCGGTACCAGAGCCTTGAAACCGCGTCGTCGTCAGGGCAAATGCTTGACAGGAA
ACATTCAACTAGATCACATGGAAGCGGAGGAGAGACTTCCTTCTCCTTCAAGAGGGCTTCCAGGGAGATTGCTCCGGAGC
CAGAAGGGTTCGAGGAGAATGTTGTCGTGTAGAACTGAAATTACACCGATTCTTTCGAAGAATTTGTGATTCATTCATAC
CTGTGTATAATCTGATCTTCTGATGAGCATGATTCGGGGTCTCGAAGTGAGAATTGTGCATATAGAGAAGTTTTCGGGGT
TTTTATTTCTCTTTTTTTTTTCCTTCATATGTTGGAGAATTGTTTTGGTTTACTGAACGCATGGTACTTGATGTTCTCAT
TGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28258.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis