Browse Element(s) Details


Os.57488.1.S1_x_at

Description gb:D42221
DB_XREF= gi:3106505
DB_XREF=D42221
CLONE=S087
TID=Os.57488.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57488 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for succinate dehydrogenase flavoprotein subunit, partial sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g042404/11succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04200NANA7+1832133..1834007UDP-3-O- glucosamine N-acyltransferase, putative, expressed
LOC_Os07g04210Os.52843.1.S1_at8/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04210OsAffx.28272.1.S1_at1/117+1840296..1846876calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g04220OsAffx.28258.1.S1_at11/117+1849857..1854420wound and phytochrome signaling involved receptor like kinase, putative, expressed
LOC_Os07g04230OsAffx.16077.1.S1_at10/117+1854979..1859026mitochondrial transcription termination factor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240OsAffx.5201.1.S1_s_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.22581.1.S1_at11/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04240Os.57488.1.S1_x_at4/117+1858914..1864831succinate dehydrogenase flavoprotein subunit, mitochondrial precursor, putative, expressed
LOC_Os07g04250OsAffx.28259.1.S1_at10/117+1872211..1875242hypothetical protein
LOC_Os07g04260OsAffx.5202.1.S1_at10/117+1877214..1879240hypothetical protein
LOC_Os07g04270NANA7+1889148..1889533hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006121biological_processmitochondrial electron transport, succinate to ubiquinone
GO:0009435biological_processNAD biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005749cellular_componentrespiratory chain complex II (sensu Eukaryota)
GO:0000104molecular_functionsuccinate dehydrogenase activity
GO:0008734molecular_functionL-aspartate oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57488.1.S1_x_at--303--8291NONE
GGCTTCGAGAGCGTTCAACACGGCT
NONE
Os.57488.1.S1_x_at--143--3651NONE
CTTCGAGAGCGTTCAACACGGCTTG
NONE
Os.57488.1.S1_x_at--704--1371Chr07:1864269..1864288 (20 bp)
AGAGCGTTCAACACGGCTTGCATCA
LOC_Os07g04240
Os.57488.1.S1_x_at--872--6751Chr07:1864264..1864288 (25 bp)
GTTCAACACGGCTTGCATCACCAAG
LOC_Os07g04240
Os.57488.1.S1_x_at--362--2171Chr07:1864259..1864283 (25 bp)
ACACGGCTTGCATCACCAAGCTCTT
LOC_Os07g04240
Os.57488.1.S1_x_at--938--2691NONE
AAGCTCTTCCCACGCGTCGACACCG
NONE
Os.57488.1.S1_x_at--227--2171NONE
ACACCGTCGCGCGAGGGTGCATAAA
NONE
Os.57488.1.S1_x_at--864--9331NONE
TCGCGCGAGGGTGCATAAATGCTGC
NONE
Os.57488.1.S1_x_at--184--4571NONE
GCGCGAGGGTGCATAAATGCTGCTC
NONE
Os.57488.1.S1_x_at--86--6151NONE
GAGGGTGCATAAATGCTGCTCTTGA
NONE
Os.57488.1.S1_x_at--742--7771Chr07:1863179..1863201 (22 bp)
GGTGCATAAATGCTGCTCTTGAAAC
LOC_Os07g04240
Target Sequence 
GGCTTCGAGAGCGTTCAACACGGCTTGCATCACCAAGCTCTTCCCACGCGTCGACACCGTCGCGCGAGGGTGCATAAATG
CTGCTCTTGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57488.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis