Browse Element(s) Details


OsAffx.28262.1.S1_x_at

Description tigr:9635.m00383
TID=OsAffx.28262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0452011/11Protein kinase domain containing protein, expressed
LOC_Os03g564701/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04540OsAffx.28263.1.S1_at11/117+2004905..2005690hypothetical protein
LOC_Os07g04550Os.46529.1.S1_a_at11/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed
LOC_Os07g04550Os.17736.1.S1_at1/117+2005963..2011228pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28262.1.S1_x_at--271--2091Chr07:1991458..1991482 (25 bp)
ACAAGTCCGACGTGTTCTCCTACGG
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--926--4691Chr07:1991314..1991338 (25 bp)
GCGGCGGCTACGACGACATCGTCGA
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--485--992Chr07:1991207..1991231 (25 bp)
AGGAGGCGCCCCAAGATGAGCCAGG
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--313--771Chr07:1991111..1991135 (25 bp)
ATGTCGTCCAGCAGCGGCGACTCCA
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--283--7811Chr07:1991080..1991104 (25 bp)
GGTCGGGATCGTACACGGCGCAGAT
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--153--3931Chr07:1991026..1991050 (25 bp)
CGGCCAGCCCGGAGTACTACAGCAG
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--302--1671Chr07:1991021..1991045 (25 bp)
AGCCCGGAGTACTACAGCAGCGAGT
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--1085--2011Chr07:1991011..1991035 (25 bp)
ACTACAGCAGCGAGTACCAGGGTTA
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--841--6071Chr07:1991000..1991024 (25 bp)
GAGTACCAGGGTTACGGATGCCCGT
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--293--3391Chr07:1990995..1991019 (25 bp)
CCAGGGTTACGGATGCCCGTCGCCG
LOC_Os07g04520
OsAffx.28262.1.S1_x_at--14--4111Chr07:1990956..1990980 (25 bp)
CGACAACGCGTCTTCCGGCGAGCAT
LOC_Os07g04520
Target Sequence 
ACAAGTCCGACGTGTTCTCCTACGGCGTCATGCTGCTGGAGCTTCTCACCGGCCGCCGCCCCGCCGACCGGAGCTCCTAC
GGCGCCGACTGCCTCGTCGACTGGGCGCGCCAGGCGCTGCCCCGCGCGATGGCCGCCGGCGGCGGCGGCGGCTACGACGA
CATCGTCGACCCGCGGCTGCGCGGCGAGTACGACCGGGCGGAGGCGGCGCGCGTCGCCGCCTGCGCCGTCGCCTGCGTCC
GCCACGCCGGCAGGAGGCGCCCCAAGATGAGCCAGGTGGTGAAGGTGCTCGAGGGGGACGTGTCGCCGGAGGAGCTCGGC
GACGGCGCGCGGCCCGGGCAGAGCGCCATGTCGTCCAGCAGCGGCGACTCCAGCTCGGGGTCGGGATCGTACACGGCGCA
GATGGAGCGGGTCAGGCGGACGGCGGCGTCGCCGGCCAGCCCGGAGTACTACAGCAGCGAGTACCAGGGTTACGGATGCC
CGTCGCCGGCCAGCAGCGCCGGCGACAACGCGTCTTCCGGCGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28262.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis