Browse Element(s) Details


OsAffx.28290.2.S1_at

Description tigr:9635.m00481
TID=OsAffx.28290.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=flavonol sulfotransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0545010/11Sulfotransferase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05450OsAffx.28290.2.S1_at10/117+2507589..2508971Sulfotransferase domain containing protein
LOC_Os07g05460OsAffx.28290.1.S1_at11/117+2515614..2517343Sulfotransferase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28290.2.S1_at--599--4591Chr07:2508733..2508757 (25 bp)
GCGACAACCTTGACTGCGAAATCAT
LOC_Os07g05450
OsAffx.28290.2.S1_at--933--3571NONE
CATATACATATGCAGCTTTGCTTGT
NONE
OsAffx.28290.2.S1_at--243--4891Chr07:2508003..2508027 (25 bp)
GCTTTGCTTGTGAGGGTCGCTGCTT
LOC_Os07g05450
OsAffx.28290.2.S1_at--365--4931Chr07:2507982..2508006 (25 bp)
GCTTGAGCGGCCCTATTTGGAACCA
LOC_Os07g05450
OsAffx.28290.2.S1_at--981--8911Chr07:2507979..2508003 (25 bp)
TGAGCGGCCCTATTTGGAACCACAT
LOC_Os07g05450
OsAffx.28290.2.S1_at--1074--8171Chr07:2507964..2507988 (25 bp)
GGAACCACATCGTCGGTTACTGGAA
LOC_Os07g05450
OsAffx.28290.2.S1_at--488--3531Chr07:2507957..2507981 (25 bp)
CATCGTCGGTTACTGGAACGCGAGC
LOC_Os07g05450
OsAffx.28290.2.S1_at--48--5371Chr07:2507896..2507920 (25 bp)
GAAGAGATGCTGCAGTACCCCATCG
LOC_Os07g05450
OsAffx.28290.2.S1_at--212--8911Chr07:2507886..2507910 (25 bp)
TGCAGTACCCCATCGACAATTTTAG
LOC_Os07g05450
OsAffx.28290.2.S1_at--134--5611Chr07:2507872..2507896 (25 bp)
GACAATTTTAGGAAGCTGGCTCGAT
LOC_Os07g05450
OsAffx.28290.2.S1_at--1058--10351Chr07:2507867..2507891 (25 bp)
TTTTAGGAAGCTGGCTCGATTCGTC
LOC_Os07g05450
Target Sequence 
GCGACAACCTTGACTGCGAAATCATATACATATGCAGCTTTGCTTGTGAGGGTCGCTGCTTGAGCGGCCCTATTTGGAAC
CACATCGTCGGTTACTGGAACGCGAGCAAGGCGAGGCCGGAGACGGTGTTGTTCTTGAGGTACGAAGAGATGCTGCAGTA
CCCCATCGACAATTTTAGGAAGCTGGCTCGATTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28290.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis