Browse Element(s) Details


OsAffx.28289.1.S1_at

Description tigr:9635.m00477
TID=OsAffx.28289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0541010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed
LOC_Os07g05450OsAffx.28290.2.S1_at10/117+2507589..2508971Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28289.1.S1_at--907--9211Chr07:2484191..2484215 (25 bp)
TCCACTGCAGGCGTATCTGAGCAAG
LOC_Os07g05410
OsAffx.28289.1.S1_at--1116--6071Chr07:2484164..2484188 (25 bp)
GAGTATACTAGTAGCCTGCTCCATA
LOC_Os07g05410
OsAffx.28289.1.S1_at--265--9111Chr07:2484148..2484172 (25 bp)
TGCTCCATAGCATATGCGGTCTCGT
LOC_Os07g05410
OsAffx.28289.1.S1_at--938--611Chr07:2484135..2484159 (25 bp)
ATGCGGTCTCGTAAATCACATGCGG
LOC_Os07g05410
OsAffx.28289.1.S1_at--203--3071Chr07:2484122..2484146 (25 bp)
AATCACATGCGGGACTGGATTGTCA
LOC_Os07g05410
OsAffx.28289.1.S1_at--905--5731Chr07:2484110..2484134 (25 bp)
GACTGGATTGTCAGCGCCATGGACG
LOC_Os07g05410
OsAffx.28289.1.S1_at--136--851NONE
ATGGACGCTCCTGCACATGACGGCG
NONE
OsAffx.28289.1.S1_at--32--8391Chr07:2483426..2483450 (25 bp)
GGCGAGGCAGCTCCTAATCTTGTCC
LOC_Os07g05410
OsAffx.28289.1.S1_at--383--1592Chr04:12631758..12632163 (25 bp)
AGCTCCTAATCTTGTCCCAGTTCTT
NONE
OsAffx.28289.1.S1_at--658--1871Chr07:2483367..2483391 (25 bp)
ACGTCGATTAGTCCCCGAGACGGTG
LOC_Os07g05410
OsAffx.28289.1.S1_at--18--5431Chr07:2483259..2483283 (25 bp)
GAAGCCGACGAGTGTGCAGCTCATG
LOC_Os07g05410
Target Sequence 
TCCACTGCAGGCGTATCTGAGCAAGAGGAGTATACTAGTAGCCTGCTCCATAGCATATGCGGTCTCGTAAATCACATGCG
GGACTGGATTGTCAGCGCCATGGACGCTCCTGCACATGACGGCGTCGGCGAGGCAGCTCCTAATCTTGTCCCAGTTCTTG
CTGCTCCCCACGTGGCGCTGCAGCCACGTCGATTAGTCCCCGAGACGGTGCTCCCTGTACCCGCGGCCGGAGACGGCCTC
GCCGGCGCCACGGTTGCGGTTGGTGACGGCAATGGGCCAGTGGCGAAGGCGGTGAAGCCGACGAGTGTGCAGCTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis