Browse Element(s) Details


OsAffx.28287.1.S1_at

Description tigr:9635.m00474
TID=OsAffx.28287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0538011/11BadF/BadG/BcrA/BcrD ATPase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28287.1.S1_at--1156--7691Chr07:2465123..2465147 (25 bp)
GGGTCCTGAAACAGCGCTTACAAAC
LOC_Os07g05380
OsAffx.28287.1.S1_at--1069--10471Chr07:2465140..2465164 (25 bp)
TTACAAACAGCATCCTTGACTTCCT
LOC_Os07g05380
OsAffx.28287.1.S1_at--621--571Chr07:2465151..2465175 (25 bp)
ATCCTTGACTTCCTTGGACTCGCAT
LOC_Os07g05380
OsAffx.28287.1.S1_at--951--8111Chr07:2465166..2465190 (25 bp)
GGACTCGCATCACCAGACGAATTGA
LOC_Os07g05380
OsAffx.28287.1.S1_at--215--271Chr07:2465458..2465482 (25 bp)
ATATGAAGACCAATCTTGGGCGCGA
LOC_Os07g05380
OsAffx.28287.1.S1_at--616--431Chr07:2465470..2465494 (25 bp)
ATCTTGGGCGCGAATAGCTGACCTT
LOC_Os07g05380
OsAffx.28287.1.S1_at--679--1591Chr07:2465485..2465509 (25 bp)
AGCTGACCTTCTTCCGGTTGTGGTA
LOC_Os07g05380
OsAffx.28287.1.S1_at--767--3211Chr07:2465542..2465566 (25 bp)
CAAGATCTTGCACAATTCAGTTGGT
LOC_Os07g05380
OsAffx.28287.1.S1_at--1024--6611Chr07:2465561..2465585 (25 bp)
GTTGGTGAACTAGCTTCCAGTGTCA
LOC_Os07g05380
OsAffx.28287.1.S1_at--914--3631Chr07:2465574..2465598 (25 bp)
CTTCCAGTGTCAAGGCTGTAGTGCA
LOC_Os07g05380
OsAffx.28287.1.S1_at--108--831Chr07:2465833..2465857 (25 bp)
ATGGTTGGTAAAGTTCTCATGGCAA
LOC_Os07g05380
Target Sequence 
GGGTCCTGAAACAGCGCTTACAAACAGCATCCTTGACTTCCTTGGACTCGCATCACCAGACGAATTGATAGGCTGGACAT
ATGAAGACCAATCTTGGGCGCGAATAGCTGACCTTCTTCCGGTTGTGGTAGAATCTGCTGAAGCTGGTGATGAAGTAGCA
AACAAGATCTTGCACAATTCAGTTGGTGAACTAGCTTCCAGTGTCAAGGCTGTAGTGCAAAGACTTGAATTGAGCGGTGA
AGATGGAAAAGACCATTTTCCTCTTGTTATGGTTGGTAAAGTTCTCATGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis