Browse Element(s) Details


OsAffx.5220.1.S1_at

Description tigr:9635.m00471
TID=OsAffx.5220.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0535010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05320OsAffx.28286.1.S1_at11/117+2426510..2427848expressed protein
LOC_Os07g05330OsAffx.23366.1.S1_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05330OsAffx.23366.2.S1_s_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5220.1.S1_at--399--9731Chr07:2447201..2447225 (25 bp)
TCAAGGATGTTGGTCGGGAGCTCAA
LOC_Os07g05350
OsAffx.5220.1.S1_at--711--9011Chr07:2447165..2447189 (25 bp)
TGCAATGTGCTAGCTGGATGAGGCC
LOC_Os07g05350
OsAffx.5220.1.S1_at--141--711Chr07:2447148..2447172 (25 bp)
ATGAGGCCACTAGCGGCTCAGGAGC
LOC_Os07g05350
OsAffx.5220.1.S1_at--1062--3911Chr07:2447138..2447159 (22 bp)
CGGCTCAGGAGCTCGACAAAGGTTT
LOC_Os07g05350
OsAffx.5220.1.S1_at--361--3771NONE
CTCGACAAAGGTTTCGCCGGTGTTG
NONE
OsAffx.5220.1.S1_at--20--4731Chr07:2446462..2446486 (25 bp)
GCTGTCCCAGTGTCGCTTTTAATCT
LOC_Os07g05350
OsAffx.5220.1.S1_at--281--10371Chr07:2446446..2446470 (25 bp)
TTTTAATCTGGACCGCAGCTGGCTT
LOC_Os07g05350
OsAffx.5220.1.S1_at--397--8491Chr07:2446427..2446451 (25 bp)
TGGCTTGCTCTCCACATCAAGGGTC
LOC_Os07g05350
OsAffx.5220.1.S1_at--1044--3551Chr07:2446413..2446437 (25 bp)
CATCAAGGGTCTGCGCGGTGTCCGA
LOC_Os07g05350
OsAffx.5220.1.S1_at--253--551Chr07:2446384..2446408 (25 bp)
ATCCCGGCTGCGTCGCTGAAGATGG
LOC_Os07g05350
OsAffx.5220.1.S1_at--1123--9431Chr07:2446287..2446311 (25 bp)
TCGGTTCATTGCTTGGCCAGAGCGA
LOC_Os07g05350
Target Sequence 
TCAAGGATGTTGGTCGGGAGCTCAACAAGGTCAAGGTGCAATGTGCTAGCTGGATGAGGCCACTAGCGGCTCAGGAGCTC
GACAAAGGTTTCGCCGGTGTTGCTTCATGGCGATCGGAGAAGACGATGGTGGCGGTGGTGTTTGTGGCCGTGGCTGTCCC
AGTGTCGCTTTTAATCTGGACCGCAGCTGGCTTGCTCTCCACATCAAGGGTCTGCGCGGTGTCCGACGCAATCCCGGCTG
CGTCGCTGAAGATGGACGGATCTGGGGCGTTTGGCGTCCTTTCCATGGCGACAAGGGCTTGCGGTGGTGGATCTGGTGCA
GCTGGCCTCGGTTCATTGCTTGGCCAGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5220.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis