Browse Element(s) Details


Os.28301.1.S2_at

Description gb:CB647177
DB_XREF= gi:29642170
DB_XREF=OSJNEb09P23.r
CLONE=OSJNEb09P23
TID=Os.28301.1
CNT=150
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.28301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-046-C07, full insert sequence
FL= gb:AK062172.1 gb:AK120691.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0536011/11Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05320OsAffx.28286.1.S1_at11/117+2426510..2427848expressed protein
LOC_Os07g05330OsAffx.23366.1.S1_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05330OsAffx.23366.2.S1_s_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009523cellular_componentphotosystem II
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28301.1.S2_at--227--2311Chr07:2454332..2454356 (25 bp)
AAAGGATGGCTATCACCTTCAAAAA
LOC_Os07g05360
Os.28301.1.S2_at--975--4851Chr07:2454368..2454392 (25 bp)
GCTATCCAGGATGCATGCCTTAAGA
LOC_Os07g05360
Os.28301.1.S2_at--377--10491Chr07:2454492..2454516 (25 bp)
TTAAGACTTTATCCCTATATGCAAA
LOC_Os07g05360
Os.28301.1.S2_at--302--4951Chr07:2454602..2454626 (25 bp)
GCATTTGACTCGCTTTGTTTCATAG
LOC_Os07g05360
Os.28301.1.S2_at--6--6931Chr07:2454626..2454650 (25 bp)
GTATGTTGGCTTATCTATGTGAGAA
LOC_Os07g05360
Os.28301.1.S2_at--866--6431Chr07:2454664..2454688 (25 bp)
GATCAGTAATCATGCTTGTCGACAC
LOC_Os07g05360
Os.28301.1.S2_at--1011--631Chr07:2454675..2454699 (25 bp)
ATGCTTGTCGACACAGCTCTTTGGA
LOC_Os07g05360
Os.28301.1.S2_at--759--2711Chr07:2454731..2454755 (25 bp)
AAGCAGGCCTGTTTCCTTTTCAGGA
LOC_Os07g05360
Os.28301.1.S2_at--588--7311Chr07:2454784..2454808 (25 bp)
GTGCTTCTTCCGTTTTCGACAGCAT
LOC_Os07g05360
Os.28301.1.S2_at--164--5651Chr07:2454801..2454825 (25 bp)
GACAGCATCCTGTCGATGTACAGTT
LOC_Os07g05360
Os.28301.1.S2_at--2--6691Chr07:2454823..2454847 (25 bp)
GTTGCCAACATGTACAGTTCCTGTT
LOC_Os07g05360
Target Sequence 
AAAGGATGGCTATCACCTTCAAAAAAAAAAAGGATGGCTATCCAGGATGCATGCCTTAAGAATCTAAATTTCCATCATAA
TAGAAGAGGGTTTGCACCATAAAACTTATTACCCTCTTAAATAAGATTATCTATGTGAGAATCAGATTACTTTACAATGA
TTAAGACTTTATCCCTATATGCAAAAATCTCACAGAAATTAATATATGTTCTTTCAGACAGAAATGAAAATGATCTTCAG
AACTTAAAGAACGGTGTTGATAGGCGGGAAGCATTTGACTCGCTTTGTTTCATAGTATGTTGGCTTATCTATGTGAGAAT
TGAAGAGTGTTCGATCAGTAATCATGCTTGTCGACACAGCTCTTTGGAGGGGTCAAGGAGGAGCTCATGATCTGGAAGGA
AGCAGGCCTGTTTCCTTTTCAGGATGAGTAGCTTGTAATTGTGGGGTTTCCTGTGCTTCTTCCGTTTTCGACAGCATCCT
GTCGATGTACAGTTGCCAACATGTACAGTTCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28301.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis