Browse Element(s) Details


OsAffx.28288.1.S1_s_at

Description tigr:9635.m00475
TID=OsAffx.28288.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0539011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28288.1.S1_s_at--249--6831Chr07:2467283..2467307 (25 bp)
GTTTCAAGCATCTGAAATCTCTCCA
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--628--7671Chr07:2467214..2467238 (25 bp)
GGGATTCGTCAGACTCAATTTTGGA
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--334--5711Chr07:2467203..2467227 (25 bp)
GACTCAATTTTGGACCTCTAGGTGA
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--296--6671Chr07:2467172..2467196 (25 bp)
GTTGCACCGCATGTAGGTATCTGAT
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--1150--71Chr07:2467077..2467101 (25 bp)
ATTGCCTCACTCCACAGATGGTTTT
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--254--6251Chr07:2467061..2467085 (25 bp)
GATGGTTTTGTAGGTTTTCACCCTG
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--81--1011Chr07:2467050..2467074 (25 bp)
AGGTTTTCACCCTGTATGGTGTATA
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--668--3951Chr07:2466986..2467010 (25 bp)
CGGTATGTTTAGTTCGTAATCGGTG
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--213--3591Chr07:2466950..2466974 (25 bp)
CATTTTTGCCTGCAGCCTGTATAGA
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--318--4471Chr07:2466943..2466967 (25 bp)
GCCTGCAGCCTGTATAGAAATGATG
LOC_Os07g05390
OsAffx.28288.1.S1_s_at--909--2991Chr07:2466925..2466949 (25 bp)
AATGATGTTTCTCTTAGTTGTATAC
LOC_Os07g05390
Target Sequence 
GTTTCAAGCATCTGAAATCTCTCCATGAGCAAATCGACCAAGCGAATATGCAGTCATTATGAAATCAAGGGGATTCGTCA
GACTCAATTTTGGACCTCTAGGTGAAAGGCAGTTGCACCGCATGTAGGTATCTGATTTATAGTAATGTGTGTGTCTAAAG
TCTAGATATCATGTGGGTGATGGGTGCAGTAACATCGTGGAAGCACATTGCCTCACTCCACAGATGGTTTTGTAGGTTTT
CACCCTGTATGGTGTATATAGAAGTTAATACTGAATAGCCTTCTGATGCAGTGATTACGGTATGTTTAGTTCGTAATCGG
TGAGGGTTGATAGCATTTTTGCCTGCAGCCTGTATAGAAATGATGTTTCTCTTAGTTGTATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28288.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis