Browse Element(s) Details


Os.1.1.S1_s_at

Description gb:D87547.1
DB_XREF= gi:1778685
TID=Os.1.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.1 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for precursor ferredoxin-NADP+ oxidoreductase, complete cds.
PROD=precursor ferredoxin-NADP+ oxidoreductase
FL= gb:AK061177.1 gb:D87547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0540011/11Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed
LOC_Os07g05430OsAffx.915.1.S1_at8/117+2495670..2499971retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05440Os.50940.1.S1_a_at11/117+2500963..2506064retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1.1.S1_s_at--1039--10151Chr07:2475951..2475975 (25 bp)
TATCTACGTCGTATGTTCATGGAGG
LOC_Os07g05400
Os.1.1.S1_s_at--1101--8011Chr07:2475931..2475955 (25 bp)
GGAGGATGTCCCAAGTTTCAAGTTT
LOC_Os07g05400
Os.1.1.S1_s_at--487--2831Chr07:2475919..2475943 (25 bp)
AAGTTTCAAGTTTGGTGGTCTGGCT
LOC_Os07g05400
Os.1.1.S1_s_at--605--8291Chr07:2475898..2475922 (25 bp)
GGCTTGGCTATTTCTAGGTGTTGCT
LOC_Os07g05400
Os.1.1.S1_s_at--479--10431Chr07:2475519..2475543 (25 bp)
TTAAACTTTTGGATGGCGGTGCACA
LOC_Os07g05400
Os.1.1.S1_s_at--598--8471Chr07:2475506..2475530 (25 bp)
TGGCGGTGCACATATCTACTTTTGT
LOC_Os07g05400
Os.1.1.S1_s_at--37--9011Chr07:2475477..2475501 (25 bp)
TGAAGGGTATGATGCCAGGGATCCA
LOC_Os07g05400
Os.1.1.S1_s_at--1143--1051Chr07:2475461..2475485 (25 bp)
AGGGATCCAGGACACACTCAAGAGA
LOC_Os07g05400
Os.1.1.S1_s_at--47--5111Chr07:2475341..2475365 (25 bp)
GCACGGGCTGTGATTTTGTGATTGT
LOC_Os07g05400
Os.1.1.S1_s_at--1058--2671Chr07:2475285..2475309 (25 bp)
AAGCGATGATTCTCGTTGCATTGTA
LOC_Os07g05400
Os.1.1.S1_s_at--749--9791Chr07:2475241..2475265 (25 bp)
TAAGCTTCTGCTTGACATGGTGAAT
LOC_Os07g05400
Target Sequence 
TATCTACGTCGTATGTTCATGGAGGATGTCCCAAGTTTCAAGTTTGGTGGTCTGGCTTGGCTATTTCTAGGTGTTGCTAA
CACTGATAGCCTTCTGTATGATGAAGAGTTCACAAACTACCTTCAGCAGTATCCAGACAATTTCAGGTATGATAAAGCAC
TAAGTAGGGAACAGAAGAATAAGAATGGTGGAAAGATGTATGTGCAGGACAAGATTGAAGAGTACAGCGATGAAATTTTT
AAACTTTTGGATGGCGGTGCACATATCTACTTTTGTGGTTTGAAGGGTATGATGCCAGGGATCCAGGACACACTCAAGAG
AGTAGCTGAGCAAAGAGGTGAGAGTTGGGAGCAGAAGCTGTCGCAGCTCAAAAAGAACAAACAATGGCACGTGGAGGTTT
ACTAAGTTACTAAAAAGCACGGGCTGTGATTTTGTGATTGTTTTGCAGCGAGTTGAAACATAAAACAGTAAAAAGCGATG
ATTCTCGTTGCATTGTAAAATTGTCAATCTTATTCATAAGCTTCTGCTTGACATGGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis