Browse Element(s) Details


Os.53726.1.S1_at

Description gb:AK099551.1
DB_XREF= gi:32984760
TID=Os.53726.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013033H24, full insert sequence.
FL= gb:AK099551.1 gb:AK105705.1 gb:AK102834.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0537011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05330OsAffx.23366.1.S1_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05330OsAffx.23366.2.S1_s_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53726.1.S1_at--1061--10731Chr07:2457149..2457173 (25 bp)
TTGAGACCATAATCGACCCTCGGTT
LOC_Os07g05370
Os.53726.1.S1_at--677--5951Chr07:2457052..2457076 (25 bp)
GAGAAGCCGGCCTTCGATTGGTGAA
LOC_Os07g05370
Os.53726.1.S1_at--576--7351Chr07:2457032..2457056 (25 bp)
GTGAAGTCCTGTGGCACCTAGAGAG
LOC_Os07g05370
Os.53726.1.S1_at--677--371Chr07:2456993..2457017 (25 bp)
ATCAAGGTCTTCTGCAAAGTGCGAA
LOC_Os07g05370
Os.53726.1.S1_at--1044--371Chr07:2456956..2456980 (25 bp)
ATCACAGCCTGAACTGAAGCTCTCT
LOC_Os07g05370
Os.53726.1.S1_at--542--8991Chr07:2456942..2456966 (25 bp)
TGAAGCTCTCTGATGCATCCTGCAA
LOC_Os07g05370
Os.53726.1.S1_at--347--5351Chr07:2456901..2456925 (25 bp)
GAAGTTGAGGAATCCTGCCGTGCAG
LOC_Os07g05370
Os.53726.1.S1_at--985--611Chr07:2456816..2456840 (25 bp)
ATGCTGGTCAAACTAGTGGCTTCAA
LOC_Os07g05370
Os.53726.1.S1_at--524--6331Chr07:2456750..2456774 (25 bp)
GATGCACTGCTATCTAGTATTGTAA
LOC_Os07g05370
Os.53726.1.S1_at--333--10131Chr07:2456718..2456742 (25 bp)
TATGAGTGTCCCTACAATGTACTGA
LOC_Os07g05370
Os.53726.1.S1_at--752--3131Chr07:2456593..2456617 (25 bp)
AATTCTAGAGCCGTATGCAATGCAA
LOC_Os07g05370
Target Sequence 
TTGAGACCATAATCGACCCTCGGTTAGAGGGAAATTACACACTGGAGTCCATCAGGAAATTCAGTGAGATAGCTGAAAAA
TGCCTTGCAGATGAAGGGAGAAGCCGGCCTTCGATTGGTGAAGTCCTGTGGCACCTAGAGAGTGCTTTGCAGTTGCATCA
AGGTCTTCTGCAAAGTGCGAATACTGATGATTTATCACAGCCTGAACTGAAGCTCTCTGATGCATCCTGCAATTTAGGGT
GCATCGAAGAAGTTGAGGAATCCTGCCGTGCAGGGTCCCAGGATGTGAATGAGGAATATGTGGATGTCAAAATTGAAGTT
CCATGATAATGGAATGCTGGTCAAACTAGTGGCTTCAAGCAACTGAATAGGGTGAGTGTCAAATTAACAAAAATGTTTAG
ATGCACTGCTATCTAGTATTGTAACACCATATATGAGTGTCCCTACAATGTACTGAGATTATTTTGGTACAGTTAGGAGA
AAACTCTCTTCATTTCTTTTGTACTTGTGCTGATGTACAAGTCTTTATGATGCAAATTTCATTGATTCTTTTGTAAAATT
CTAGAGCCGTATGCAATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis