Browse Element(s) Details


Os.8365.1.S1_s_at

Description gb:AU095504
DB_XREF= gi:8858186
DB_XREF=AU095504
CLONE=R3273
TID=Os.8365.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.8365 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0538011/11BadF/BadG/BcrA/BcrD ATPase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05370Os.53726.1.S1_at11/117+2456574..2460377protein kinase family protein, putative, expressed
LOC_Os07g05380OsAffx.28287.1.S1_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05380Os.8365.1.S1_s_at11/117+2464058..2466367BadF/BadG/BcrA/BcrD ATPase family protein, expressed
LOC_Os07g05390OsAffx.28288.1.S1_s_at11/117+2466882..2472086expressed protein
LOC_Os07g05390OsAffx.28288.1.S1_at10/117+2466882..2472086expressed protein
LOC_Os07g05400Os.1.1.S1_s_at11/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05400Os.48544.1.S1_at10/117+2475168..2478502Ferredoxin-NADP reductase, embryo isozyme, chloroplast precursor, putative, expressed
LOC_Os07g05410OsAffx.28289.1.S1_at10/117+2483220..2484308hypothetical protein
LOC_Os07g05420Os.54631.1.A1_at8/117+2487098..2488701Flavonol 3-O-glucosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8365.1.S1_s_at--933--8651Chr07:2465893..2465917 (25 bp)
TGTGTTACCAAAACTTATCCAGGAG
LOC_Os07g05380
Os.8365.1.S1_s_at--281--10151Chr07:2465908..2465932 (25 bp)
TATCCAGGAGCCTATCCAATACACC
LOC_Os07g05380
Os.8365.1.S1_s_at--345--331Chr07:2465926..2466167 (25 bp)
ATACACCCCAAGGTGGAACCAGCTG
LOC_Os07g05380
Os.8365.1.S1_s_at--989--8511Chr07:2466156..2466180 (25 bp)
TGGAACCAGCTGTTGGTGCAGCACT
LOC_Os07g05380
Os.8365.1.S1_s_at--1131--7331Chr07:2466171..2466195 (25 bp)
GTGCAGCACTGTTGGCATGGAATGC
LOC_Os07g05380
Os.8365.1.S1_s_at--834--3011Chr07:2466191..2466215 (25 bp)
AATGCTGTAGCAAGTGAATTAGACG
LOC_Os07g05380
Os.8365.1.S1_s_at--261--5211Chr07:2466206..2466230 (25 bp)
GAATTAGACGGTAGTCCTCGGACTG
LOC_Os07g05380
Os.8365.1.S1_s_at--88--10031Chr07:2466217..2466241 (25 bp)
TAGTCCTCGGACTGTTGCCTAGAAT
LOC_Os07g05380
Os.8365.1.S1_s_at--181--6691Chr07:2466230..2466254 (25 bp)
GTTGCCTAGAATGTGATCTTCCATC
LOC_Os07g05380
Os.8365.1.S1_s_at--192--7411Chr07:2466242..2466266 (25 bp)
GTGATCTTCCATCATATTCTTGTAT
LOC_Os07g05380
Os.8365.1.S1_s_at--1015--10731Chr07:2466290..2466314 (25 bp)
TTGCACCAAGTTGCTTTGGATATTT
LOC_Os07g05380
Target Sequence 
TGTGTTACCAAAACTTATCCAGGAGCCTATCCAATACACCCCAAGGTGGAACCAGCTGTTGGTGCAGCACTGTTGGCATG
GAATGCTGTAGCAAGTGAATTAGACGGTAGTCCTCGGACTGTTGCCTAGAATGTGATCTTCCATCATATTCTTGTATATT
ACATTAGTGTTTTGCATTTNTTGCACCAAGTTGCTTTGGATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8365.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis