Browse Element(s) Details


OsAffx.28294.2.S1_x_at

Description tigr:9635.m00522
TID=OsAffx.28294.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0584011/11expressed protein
LOC_Os11g4177010/11hypothetical protein
LOC_Os05g362408/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed
LOC_Os07g05890NANA7+2827967..2828317hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28294.2.S1_x_at--462--10693Chr05:21400570..21400594 (25 bp)
TTGCCACATGGTCGCGTACAGATAG
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--718--8333Chr05:21400626..21400650 (25 bp)
GGCTGTGGCCAAATCAACAAATGTT
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--146--2472Chr11:24600405..24600429 (25 bp)
AACAAATGTTCGACCTGCCAATTCA
LOC_Os11g41770
OsAffx.28294.2.S1_x_at--791--5832Chr11:24600394..24600418 (25 bp)
GACCTGCCAATTCAATTGCTTTCCA
LOC_Os11g41770
OsAffx.28294.2.S1_x_at--1083--2253Chr05:21400713..21400737 (25 bp)
AAATGAACAACTACTCCGGGAGAAT
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--769--6973Chr05:21400889..21400913 (25 bp)
GTACCACAAGAATTGGACTGTCCAG
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--1152--3572Chr11:24600126..24600150 (25 bp)
CATTTGCACAGGTAAGCGGAGTTCA
LOC_Os11g41770
OsAffx.28294.2.S1_x_at--626--10213Chr05:21400977..21401001 (25 bp)
TATTTTCTCCTATACTGCTGTGGTT
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--247--1992Chr05:21400990..21401014 (25 bp)
ACTGCTGTGGTTACTCATAGATGAA
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--956--7273Chr05:21401034..21401058 (25 bp)
GTGCCAGTACAATTTGGTTGCCCTA
LOC_Os05g36240
OsAffx.28294.2.S1_x_at--979--3113Chr05:21401044..21401068 (25 bp)
AATTTGGTTGCCCTATTGAAATAGC
LOC_Os05g36240
Target Sequence 
TTGCCACATGGTCGCGTACAGATAGCGAATGGACCTGTTAGGAAGGCTAATATTTTGGCTGTGGCCAAATCAACAAATGT
TCGACCTGCCAATTCAATTGCTTTCCAAAATATGGCTCAACAAACTCAGAATATGGCTCGACAAAATGAACAACTACTCC
GGGAGAATCAATACATGCGCAAAAAACAGGAACGAACTGACAAGTTGTTATTGGTATTAAGTTACAATAATACTTTTACT
CTCAGTTTTAGTTTTTAGTTTCTAAACCCAGTTGGCTACTTTTTAAATGTAGGCACTTTATGAAAAGTTGGGTGAACAAG
TACCACAAGAATTGGACTGTCCAGTAGAAGAGGAAGATCCATTTGCACAGGTAAGCGGAGTTCAATTATTTTAGTTATTT
ACCTAAGTATTTTCTCCTATACTGCTGTGGTTACTCATAGATGAACTAGCTGAATATTTATATTGTGCCAGTACAATTTG
GTTGCCCTATTGAAATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28294.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis