Browse Element(s) Details


OsAffx.28302.1.S1_at

Description tigr:9635.m00553
TID=OsAffx.28302.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0631511/11hypothetical protein
LOC_Os07g0619911/11hypothetical protein
LOC_Os07g0613911/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06262NANA7+3045275..3048216retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06274NANA7+3048533..3054628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06286OsAffx.28306.1.S1_at11/117+3056736..3057707Peroxidase family protein
LOC_Os07g06286OsAffx.28306.1.S1_x_at11/117+3056736..3057707Peroxidase family protein
LOC_Os07g06300OsAffx.11103.1.S1_x_at6/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300OsAffx.11103.1.S1_at4/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300Os.27778.1.S1_a_at2/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300Os.56899.1.S1_at1/117+3059999..3067538Peroxidase family protein
LOC_Os07g06300OsAffx.17249.1.S1_at1/117+3059999..3067538Peroxidase family protein
LOC_Os07g06315OsAffx.28302.1.S1_at11/117+3069518..3070602hypothetical protein
LOC_Os07g06325NANA7+3071099..3071395hypothetical protein
LOC_Os07g06335NANA7+3073086..3074553hypothetical protein
LOC_Os07g06345NANA7+3079516..3080037hypothetical protein
LOC_Os07g06355NANA7+3090114..3093055retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06365NANA7+3093372..3099467retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28302.1.S1_at--659--5856Chr07:3102571..3102591 (21 bp)
GACCACATCGTCTGCATGCATTCCG
NONE
OsAffx.28302.1.S1_at--369--2193Chr07:3069784..3070095 (25 bp)
ACAAGAGCTACCAGGGTTATGATGA
LOC_Os07g06315
OsAffx.28302.1.S1_at--853--9973Chr07:3069776..3070087 (25 bp)
TACCAGGGTTATGATGAGGCGCCTT
LOC_Os07g06315
OsAffx.28302.1.S1_at--482--713Chr07:3069763..3069787 (25 bp)
ATGAGGCGCCTTGAGCAGCGCATTA
LOC_Os07g06315
OsAffx.28302.1.S1_at--332--5933Chr07:3069751..3069775 (25 bp)
GAGCAGCGCATTAGGAAACAGGAGA
LOC_Os07g06315
OsAffx.28302.1.S1_at--790--9053Chr07:3069711..3069735 (25 bp)
TGCATGGATGGCGTATTGCTCATCT
LOC_Os07g06315
OsAffx.28302.1.S1_at--499--873Chr07:3069704..3069728 (25 bp)
ATGGCGTATTGCTCATCTGAAGGCA
LOC_Os07g06315
OsAffx.28302.1.S1_at--1103--9073Chr07:3069695..3069719 (25 bp)
TGCTCATCTGAAGGCAAACCACAGG
LOC_Os07g06315
OsAffx.28302.1.S1_at--395--5113Chr07:3069682..3069706 (25 bp)
GCAAACCACAGGCTAGATTTGTTAA
LOC_Os07g06315
OsAffx.28302.1.S1_at--84--7393Chr07:3069567..3069591 (25 bp)
GTGACCAACTCAAGGTGACCGCGCA
LOC_Os07g06315
OsAffx.28302.1.S1_at--905--2533Chr07:3069561..3069585 (25 bp)
AACTCAAGGTGACCGCGCACATGTA
LOC_Os07g06315
Target Sequence 
GACCACATCGTCTGCATGCATTCCGCCGCCACCTCCACCCCACCATGGGCTTCCTCCGCACTCGCCCAGCCCCGCTATTT
CTCCACAAGAGCTACCAGGGTTATGATGAGGCGCCTTGAGCAGCGCATTAGGAAACAGGAGAGGGCGGCAGGAAGTATGC
ATGGATGGCGTATTGCTCATCTGAAGGCAAACCACAGGCTAGATTTGTTAAAATCAGACATGAGGGGTGACCAACTCAAG
GTGACCGCGCACATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis