Browse Element(s) Details


OsAffx.17249.1.S1_at

Description tigr:9636.m03059
TID=OsAffx.17249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3065011/11hypothetical protein
LOC_Os07g061901/11Peroxidase family protein, expressed
LOC_Os07g063001/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30620NANA8+18739140..18740506hypothetical protein
LOC_Os08g30634Os.24417.1.S2_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.1.S1_x_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.2.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.3.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.20353.1.S2_at1/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30650OsAffx.17249.1.S1_at11/118+18764335..18764764hypothetical protein
LOC_Os08g30660OsAffx.29439.1.S1_at11/118+18765200..18767443NB-ARC domain containing protein
LOC_Os08g30670Os.28346.3.S1_x_at7/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_x_at4/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.5.S1_x_at2/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_at1/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.4.S1_x_at1/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30680NANA8+18789375..18794234retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0008219biological_processcell death
GO:0009269biological_processresponse to desiccation
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009723biological_processresponse to ethylene stimulus
GO:0009725biological_processresponse to hormone stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009789biological_processpositive regulation of abscisic acid mediated signaling
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0010182biological_processsugar mediated signaling
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17249.1.S1_at--964--9351Chr08:18764705..18764729 (25 bp)
TCGAAGACTGCGCAGGCAAATCCTT
LOC_Os08g30650
OsAffx.17249.1.S1_at--172--5731Chr08:18764700..18764724 (25 bp)
GACTGCGCAGGCAAATCCTTGAGAT
LOC_Os08g30650
OsAffx.17249.1.S1_at--245--45912Chr11:8312331..8312350 (20 bp)
GCGCAGGCAAATCCTTGAGATTGAC
NONE
OsAffx.17249.1.S1_at--1061--4131Chr08:18764450..18764676 (25 bp)
CGCTGTCGACGGGTGTAGACCAGAA
LOC_Os08g30650
OsAffx.17249.1.S1_at--790--9351Chr08:18764445..18764671 (25 bp)
TCGACGGGTGTAGACCAGAAGGAAA
LOC_Os08g30650
OsAffx.17249.1.S1_at--574--3451Chr08:18764420..18764444 (25 bp)
CAGTAATTGGGATAGCTATTGCTTT
LOC_Os08g30650
OsAffx.17249.1.S1_at--562--3691Chr08:18764405..18764429 (25 bp)
CTATTGCTTTTGGTAGCGGTGATTC
LOC_Os08g30650
OsAffx.17249.1.S1_at--568--1631Chr08:18764391..18764415 (25 bp)
AGCGGTGATTCTGGCATAGGCTCAT
LOC_Os08g30650
OsAffx.17249.1.S1_at--805--6571Chr08:18764385..18764409 (25 bp)
GATTCTGGCATAGGCTCATCAACCA
LOC_Os08g30650
OsAffx.17249.1.S1_at--238--4831Chr08:18764372..18764396 (25 bp)
GCTCATCAACCATCTCACGAGGAAT
LOC_Os08g30650
OsAffx.17249.1.S1_at--1059--2631Chr08:18764365..18764389 (25 bp)
AACCATCTCACGAGGAATCTGCAAG
LOC_Os08g30650
Target Sequence 
TCGAAGACTGCGCAGGCAAATCCTTGAGATTGACGAAGTCACCACAGGCGCCTCGCTGTCGACGGGTGTAGACCAGAAGG
AAACAGTAATTGGGATAGCTATTGCTTTTGGTAGCGGTGATTCTGGCATAGGCTCATCAACCATCTCACGAGGAATCTGC
AAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis