Browse Element(s) Details


OsAffx.29439.1.S1_at

Description tigr:9636.m03060
TID=OsAffx.29439.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3066011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30620NANA8+18739140..18740506hypothetical protein
LOC_Os08g30634Os.24417.1.S2_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.1.S1_x_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.2.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.3.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.20353.1.S2_at1/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30650OsAffx.17249.1.S1_at11/118+18764335..18764764hypothetical protein
LOC_Os08g30660OsAffx.29439.1.S1_at11/118+18765200..18767443NB-ARC domain containing protein
LOC_Os08g30670Os.28346.3.S1_x_at7/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_x_at4/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.5.S1_x_at2/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_at1/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.4.S1_x_at1/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30680NANA8+18789375..18794234retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29439.1.S1_at--211--5191Chr08:18766857..18766881 (25 bp)
GTCTTTCAAACCACGTTGTCAGGGC
LOC_Os08g30660
OsAffx.29439.1.S1_at--471--9891Chr08:18766902..18766926 (25 bp)
TATTTCCAAACGATGTTCCGCTCGA
LOC_Os08g30660
OsAffx.29439.1.S1_at--750--10771Chr08:18766989..18767013 (25 bp)
TTGATGACCAGACTATTGCACGTTG
LOC_Os08g30660
OsAffx.29439.1.S1_at--780--5671Chr08:18767039..18767063 (25 bp)
GACATCTTTCATCCTATCATTGACA
LOC_Os08g30660
OsAffx.29439.1.S1_at--508--5171Chr08:18767091..18767115 (25 bp)
GCAAGACTCGCAGTATCGTGCACGA
LOC_Os08g30660
OsAffx.29439.1.S1_at--590--1331Chr08:18767145..18767169 (25 bp)
AGAGGTTCATCATGTCCTTTCCTGA
LOC_Os08g30660
OsAffx.29439.1.S1_at--656--2911Chr08:18767176..18767200 (25 bp)
AAGGAAAGTTCGTCATCTCTGTATC
LOC_Os08g30660
OsAffx.29439.1.S1_at--1112--271Chr08:18767205..18767229 (25 bp)
ATAGGACACCTCACAAGCGCAGAAC
LOC_Os08g30660
OsAffx.29439.1.S1_at--869--271Chr08:18767238..18767262 (25 bp)
ATATGGATTTGTCATGCGTCCGGTC
LOC_Os08g30660
OsAffx.29439.1.S1_at--360--1891Chr08:18767267..18767291 (25 bp)
ACGATCTTCGGGACGGCAGGTGACA
LOC_Os08g30660
OsAffx.29439.1.S1_at--852--3471Chr08:18767283..18767307 (25 bp)
CAGGTGACACCATTTGCGAGTTTCA
LOC_Os08g30660
Target Sequence 
GTCTTTCAAACCACGTTGTCAGGGCCTGCTTGCTATATTTGAGCATATTTCCAAACGATGTTCCGCTCGAGAAGAAAGTG
ATAATCAGGCGTTGGATAGCTGAAGGATTCGCAAGGAGCGAAGATGTGGACATTGATGACCAGACTATTGCACGTTGGAA
TTTTGAGACGTTTGTAGACTGGGACATCTTTCATCCTATCATTGACACAAGCAATAATGGCGATGTCAAGATGTGCAAGA
CTCGCAGTATCGTGCACGAGTATATGTTGTACAAGGCGTCGAGACTTGAGAGGTTCATCATGTCCTTTCCTGACTGGCGA
AGGAAAGTTCGTCATCTCTGTATCGATCATAGGACACCTCACAAGCGCAGAACTACAACAGATATGGATTTGTCATGCGT
CCGGTCTTTGACGATCTTCGGGACGGCAGGTGACACCATTTGCGAGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis