Browse Element(s) Details


Os.24417.1.S1_x_at

Description gb:AK065899.1
DB_XREF= gi:32975917
TID=Os.24417.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049M19, full insert sequence.
FL= gb:AK120280.1 gb:AK102211.1 gb:AK065899.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3063411/11DC1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30590OsAffx.17247.1.S1_at11/118+18716938..18720070C1-like domain containing protein, expressed
LOC_Os08g30600Os.47463.1.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30600Os.14491.2.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30610NANA8+18731097..18734422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30620NANA8+18739140..18740506hypothetical protein
LOC_Os08g30634Os.24417.1.S2_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.1.S1_x_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.2.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.3.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.20353.1.S2_at1/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30650OsAffx.17249.1.S1_at11/118+18764335..18764764hypothetical protein
LOC_Os08g30660OsAffx.29439.1.S1_at11/118+18765200..18767443NB-ARC domain containing protein
LOC_Os08g30670Os.28346.3.S1_x_at7/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_x_at4/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.5.S1_x_at2/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_at1/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.4.S1_x_at1/118+18769116..18778754retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24417.1.S1_x_at--72--4971Chr08:18757334..18757358 (25 bp)
GCATAGACTTACCATCAGAGCTCCA
LOC_Os08g30634
Os.24417.1.S1_x_at--635--9631Chr08:18757254..18757278 (25 bp)
TCAGAAGTTGTTCATCTTCCGCCGT
LOC_Os08g30634
Os.24417.1.S1_x_at--1099--10731Chr08:18757149..18757173 (25 bp)
TTGCAGGATCTTCAACTCGCATGTC
LOC_Os08g30634
Os.24417.1.S1_x_at--20--1271Chr08:18757121..18757145 (25 bp)
AGATAGCCACTTCTGACCATATTAA
LOC_Os08g30634
Os.24417.1.S1_x_at--901--5851Chr08:18757054..18757078 (25 bp)
GAGCCTCAAATCTCTAACAGTTGTT
LOC_Os08g30634
Os.24417.1.S1_x_at--372--8811Chr08:18757033..18757057 (25 bp)
TGTTCCTGTCTGCTTCTCTGAAGAT
LOC_Os08g30634
Os.24417.1.S1_x_at--539--2711Chr08:18756988..18757012 (25 bp)
AAGCATTGCCATTTTCTTGGATTTC
LOC_Os08g30634
Os.24417.1.S1_x_at--1103--5031Chr08:18756931..18756955 (25 bp)
GCAGAGGCTTGAGTTGTTTCCACGT
LOC_Os08g30634
Os.24417.1.S1_x_at--1124--1891Chr08:18756910..18756934 (25 bp)
ACGTGTTTGCGTCTTCCATAGACTT
LOC_Os08g30634
Os.24417.1.S1_x_at--958--6951Chr08:18756843..18756867 (25 bp)
GTAGCAGTCATGGAACTCCTGAGGA
LOC_Os08g30634
Os.24417.1.S1_x_at--258--5991Chr08:18756810..18756834 (25 bp)
GAGACTCTCTCAATGCTGAATGCCC
LOC_Os08g30634
Target Sequence 
GCATAGACTTACCATCAGAGCTCCAAGGACTGAAGTATNTCAGGACTCTGCATATTGGTGCAATGGTGACCTTTTTGAGA
TCAGAAGTTGTTCATCTTCCGCCGTTGCTGCACTTCAGACTTCCACCCAATCTAGGGTACTTTGTNGACGCAGGGAGTGT
ACAGAGTATTGAAGAACTGACCAATTTGCAGGATCTTCAACTCGCATGTCCTCAGATAGCCACTTCTGACCATATTAAGC
ACAACATGAAACTGTTGGGTTCAATTATTGGGATACTTAAGAGCCTCAAATCTCTAACAGTTGTTCCTGTCTGCTTCTCT
GAAGATTCTAATGATAACGAAAATTCAAGCATTGCCATTTTCTTGGATTTCTTAGATAAAGTTCCCCCCCCTTGTAGCCT
TCTGCAGAGGCTTGAGTTGTTTCCACGTGTTTGCGTCTTCCATAGACTTCCCAGTTGGATCATAACTATTGAGAAACTCT
GTATTTTGAAAGTAGCAGTCATGGAACTCCTGAGGAAAGACATTGAGACTCTCTCAATGCTGAATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24417.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis