Browse Element(s) Details


Os.24417.2.S1_at

Description gb:AK099981.1
DB_XREF= gi:32985190
TID=Os.24417.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24417 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129G15, full insert sequence.
FL= gb:AK099981.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3063411/11DC1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30590OsAffx.17247.1.S1_at11/118+18716938..18720070C1-like domain containing protein, expressed
LOC_Os08g30600Os.47463.1.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30600Os.14491.2.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30610NANA8+18731097..18734422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30620NANA8+18739140..18740506hypothetical protein
LOC_Os08g30634Os.24417.1.S2_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.1.S1_x_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.2.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.3.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.20353.1.S2_at1/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30650OsAffx.17249.1.S1_at11/118+18764335..18764764hypothetical protein
LOC_Os08g30660OsAffx.29439.1.S1_at11/118+18765200..18767443NB-ARC domain containing protein
LOC_Os08g30670Os.28346.3.S1_x_at7/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_x_at4/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.5.S1_x_at2/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.1.S1_at1/118+18769116..18778754retrotransposon protein, putative, unclassified
LOC_Os08g30670Os.28346.4.S1_x_at1/118+18769116..18778754retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24417.2.S1_at--939--4851Chr08:18756417..18756441 (25 bp)
GGTACGAATTTACATACCCTACTGT
LOC_Os08g30634
Os.24417.2.S1_at--64--10351Chr08:18756409..18756433 (25 bp)
TTTACATACCCTACTGTAACAATAA
LOC_Os08g30634
Os.24417.2.S1_at--299--7051Chr08:18756394..18756418 (25 bp)
GTAACAATAAACATGCCCTCTTTTC
LOC_Os08g30634
Os.24417.2.S1_at--1103--2431Chr08:18756392..18756416 (25 bp)
AACAATAAACATGCCCTCTTTTCTG
LOC_Os08g30634
Os.24417.2.S1_at--80--10611Chr08:18756372..18756396 (25 bp)
TTCTGTGTTTATTTGCGCAAGATAC
LOC_Os08g30634
Os.24417.2.S1_at--34--6831Chr08:18756366..18756390 (25 bp)
GTTTATTTGCGCAAGATACACTCCT
LOC_Os08g30634
Os.24417.2.S1_at--431--2811Chr08:18756354..18756378 (25 bp)
AAGATACACTCCTTGCCTTAACATT
LOC_Os08g30634
Os.24417.2.S1_at--412--6471Chr08:18756352..18756376 (25 bp)
GATACACTCCTTGCCTTAACATTGG
LOC_Os08g30634
Os.24417.2.S1_at--1106--2151Chr08:18756349..18756373 (25 bp)
ACACTCCTTGCCTTAACATTGGAAT
LOC_Os08g30634
Os.24417.2.S1_at--280--4311Chr08:18756344..18756368 (25 bp)
CCTTGCCTTAACATTGGAATTTGGA
LOC_Os08g30634
Os.24417.2.S1_at--234--4311Chr08:18756340..18756364 (25 bp)
GCCTTAACATTGGAATTTGGACGAG
LOC_Os08g30634
Target Sequence 
GGTACGAATTTACATACCCTACTGTAACAATAAACATGCCCTCTTTTCTGTGTTTATTTGCGCAAGATACACTCCTTGCC
TTAACATTGGAATTTGGACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24417.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis