Browse Element(s) Details


OsAffx.17247.1.S1_at

Description tigr:9636.m03052
TID=OsAffx.17247.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DC1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3059011/11C1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g30560OsAffx.17245.1.S1_at11/118+18692574..18696243hypothetical protein
LOC_Os08g30569NANA8+18698496..18698800NA
LOC_Os08g30580OsAffx.17246.1.S1_at11/118+18702015..18703765hypothetical protein
LOC_Os08g30590OsAffx.17247.1.S1_at11/118+18716938..18720070C1-like domain containing protein, expressed
LOC_Os08g30600Os.47463.1.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30600Os.14491.2.S1_x_at2/118+18723983..18727692transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30610NANA8+18731097..18734422transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g30620NANA8+18739140..18740506hypothetical protein
LOC_Os08g30634Os.24417.1.S2_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.1.S1_x_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.2.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.24417.3.S1_at11/118+18743632..18759470DC1 domain containing protein, expressed
LOC_Os08g30634Os.20353.1.S2_at1/118+18743632..18759470DC1 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17247.1.S1_at--208--3531Chr08:18717545..18717569 (25 bp)
CATGCTGTGCGAGCCTGCAGGAACT
LOC_Os08g30590
OsAffx.17247.1.S1_at--597--7631Chr08:18717379..18717403 (25 bp)
GGGACTAGCCAAGATCACTATCGAC
LOC_Os08g30590
OsAffx.17247.1.S1_at--599--5671Chr08:18717342..18717366 (25 bp)
GACATCGCGGCGTTCAGCAAGTGCA
LOC_Os08g30590
OsAffx.17247.1.S1_at--1--4651Chr08:18717333..18717357 (25 bp)
GCGTTCAGCAAGTGCAGCCTATGCA
LOC_Os08g30590
OsAffx.17247.1.S1_at--300--2971Chr08:18717251..18717275 (25 bp)
AATGGTGCTACTACAACTCCGACGT
LOC_Os08g30590
OsAffx.17247.1.S1_at--707--9031Chr08:18717197..18717221 (25 bp)
TGCACGTGTCCTGCATCAAGCAGAT
LOC_Os08g30590
OsAffx.17247.1.S1_at--743--851Chr08:18717160..18717184 (25 bp)
ATGGCAGGCAGCTCGGGACATGAAA
LOC_Os08g30590
OsAffx.17247.1.S1_at--109--711Chr08:18717099..18717123 (25 bp)
ATGATCGGTGAAGGTGGTCCTCTCC
LOC_Os08g30590
OsAffx.17247.1.S1_at--1079--3491Chr08:18717075..18717099 (25 bp)
CATGGCATTCCGTCGGAGCGAGATC
LOC_Os08g30590
OsAffx.17247.1.S1_at--460--10091Chr08:18716998..18717022 (25 bp)
TAGGACAGCCATGGAGGGAGACATC
LOC_Os08g30590
OsAffx.17247.1.S1_at--292--5991Chr08:18716981..18717005 (25 bp)
GAGACATCAGCTCTTGGGTAGCTTT
LOC_Os08g30590
Target Sequence 
CATGCTGTGCGAGCCTGCAGGAACTCCCGGTCCAAAACCGGGAGACGTTGGACCAACCGAAAGAAAGTCTTGCTACGCCT
CAAAAGCTAGTTAAAGAGGGACTAGCCAAGATCACTATCGACGGGGTCGCCTTCGACATCGCGGCGTTCAGCAAGTGCAG
CCTATGCAGCAGACAGGAGGAGGAGGGCCCGGATCACTGCTGCCGCCGCCTCCGCCGCCAGGAGCAATGGTGCTACTACA
ACTCCGACGTCGTCGACGGCGGCGGCGAGGCCGTGTCCCTGCACGTGTCCTGCATCAAGCAGATCGCACGGAGGAGATGG
CAGGCAGCTCGGGACATGAAATGTGGAGGGCAGATCATGCTGGCGATCAGCGAGGAGATGATCGGTGAAGGTGGTCCTCT
CCATGGCATTCCGTCGGAGCGAGATCGGAACATCGTCGGCGCGGTGGTGCGCGTCATCATCGCGGTGATATTTGGAGATA
GGACAGCCATGGAGGGAGACATCAGCTCTTGGGTAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17247.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis